View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4649_low_2 (Length: 424)
Name: NF4649_low_2
Description: NF4649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4649_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 45864964 - 45865370
Alignment:
| Q |
1 |
atgagattgtggattgaaatgagtgtaaagttgatagatgagtagaatggtataaatttcacgatcttgataggttgaagaaaccagcaannnnnnn-gg |
99 |
Q |
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| T |
45864964 |
atgagattgtggattgaaatgagtgtaaagttgatagatgagtagaatggtataaatttcacgatcttgataggttgaagaaaccagcaattttttttgg |
45865063 |
T |
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| Q |
100 |
catatttccccaaattaatactatgtgcatattattaactattcgacctgctaacttagtaatgaagaaaatcgactaataaattaaatactctaataga |
199 |
Q |
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| T |
45865064 |
catatttccccaaattaatactatgtgcatattattaactattcgacctgctaacttagtaatgaagaaaatcgactaataaattaaatactctaataga |
45865163 |
T |
|
| Q |
200 |
tgttaatattgtcctagtaaaagaattatgcctttcaggcctagtcataactctccatcagcacaaggaaaaggccaagctcaaaaccagtaaataaata |
299 |
Q |
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| T |
45865164 |
tgttaatattgtcctagtaaaagaattatgcctttcaggcctagtcataactctccatcagcacaaggaaaaggccaagctcaaaaccagtaaataaata |
45865263 |
T |
|
| Q |
300 |
atattgctgagagctacattagatagtcataagacatgaacaatggttataagttggaagtaaccttcaccaacgaacttgtttaaggggatgagttagg |
399 |
Q |
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| T |
45865264 |
atattgctgagagctacattagatagtcataagacatgaacaatggttataagttggaagtaaccttcaccaacgaacttgtttaaaggtatgagttagg |
45865363 |
T |
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| Q |
400 |
cccaaat |
406 |
Q |
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| T |
45865364 |
cccaaat |
45865370 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 4052217 - 4052300
Alignment:
| Q |
1 |
atgagattgtggattgaaatgagtgtaaagttgatagatgagtagaatggtataaatttcacga-tcttgataggttgaagaaa |
83 |
Q |
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||||||||||| | |||||| |||| ||| | || |||||||||||| ||||||| || ||||| | ||||||||||||||||| |
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| T |
4052217 |
atgagattgtgtaatgaaattagtgcaaaatcgaaagatgagtagaacggtataagttccacgatttttgataggttgaagaaa |
4052300 |
T |
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