View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4649_low_3 (Length: 393)

Name: NF4649_low_3
Description: NF4649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4649_low_3
NF4649_low_3
[»] chr4 (2 HSPs)
chr4 (245-375)||(21835829-21835959)
chr4 (126-173)||(21835696-21835743)
[»] chr6 (7 HSPs)
chr6 (294-361)||(392285-392352)
chr6 (18-66)||(10580331-10580379)
chr6 (94-140)||(10580453-10580499)
chr6 (215-319)||(6414336-6414440)
chr6 (185-228)||(392382-392425)
chr6 (244-281)||(392351-392388)
chr6 (336-373)||(6590575-6590612)
[»] chr8 (1 HSPs)
chr8 (99-173)||(36768788-36768862)
[»] chr5 (1 HSPs)
chr5 (306-370)||(37046524-37046587)


Alignment Details
Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 245 - 375
Target Start/End: Original strand, 21835829 - 21835959
Alignment:
Q  245 tgttggattaatgtgtagttttccaaaaggatttgttgagtggcaaattttattaacctcattgttactgtttaatctgatttctgaggtcacctatggt 344  Q
    ||||||||||||||||||||||||||||  || |||||| |||||||| |||||||||||||||||||| |||| ||| ||| ||||||| ||||||| |    
T  21835829 tgttggattaatgtgtagttttccaaaatcatatgttgattggcaaatcttattaacctcattgttactctttattctaattgctgaggttacctatgct 21835928  T
Q  345 ttatttgctaatgaatttgatgaaatgtatc 375  Q
    || |||||||| |||| ||||||| ||||||    
T  21835929 ttgtttgctaacgaatgtgatgaattgtatc 21835959  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 21835696 - 21835743
Alignment:
Q  126 tggttgcagttcaaagaaattttcgcaggtttggaattgaagaaatag 173  Q
    ||||||||||||||||||||||  ||| |||||||||| |||||||||    
T  21835696 tggttgcagttcaaagaaatttaagcaagtttggaattaaagaaatag 21835743  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 294 - 361
Target Start/End: Complemental strand, 392352 - 392285
Alignment:
Q  294 ttattaacctcattgttactgtttaatctgatttctgaggtcacctatggtttatttgctaatgaatt 361  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||| ||||    
T  392352 ttattaacctcattgttactgttcaatctgatttctgaggtcacctttgctttatttgctaataaatt 392285  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 10580331 - 10580379
Alignment:
Q  18 tatagaaccagtaaaatcatgatgtgtggaatatgtttgtgtccattat 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10580331 tatagaaccagtaaaatcatgatgtgtggaatatgtttgtgtccattat 10580379  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 10580453 - 10580499
Alignment:
Q  94 atgcctacaggttactggagatccaatgaaggtggttgcagttcaaa 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  10580453 atgcctacaggttactggagatccaatgaaggtggttgcagttcaaa 10580499  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 215 - 319
Target Start/End: Complemental strand, 6414440 - 6414336
Alignment:
Q  215 gttataattgttggtgcaagaagtttgttttgttggattaatgtgtagttttccaaaaggatttgttgagtggcaaattttattaacctcattgttactg 314  Q
    ||||||||| || | |||| |||||| || ||| | |||||||||||||||||||||| ||||||||||  || ||| ||||||||||| ||||||||||    
T  6414440 gttataattttttgcgcaaaaagtttattctgtcgtattaatgtgtagttttccaaaatgatttgttgaccggaaaactttattaacctaattgttactg 6414341  T
Q  315 tttaa 319  Q
     ||||    
T  6414340 attaa 6414336  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 392425 - 392382
Alignment:
Q  185 aactgagtgcctaagaatttcctttatttcgttataattgttgg 228  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||    
T  392425 aactgagtgcctaagaatttcctttattttgttattattgttgg 392382  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 281
Target Start/End: Complemental strand, 392388 - 392351
Alignment:
Q  244 ttgttggattaatgtgtagttttccaaaaggatttgtt 281  Q
    |||||||| | |||||||||||||||||||||||||||    
T  392388 ttgttggaatgatgtgtagttttccaaaaggatttgtt 392351  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 373
Target Start/End: Original strand, 6590575 - 6590612
Alignment:
Q  336 acctatggtttatttgctaatgaatttgatgaaatgta 373  Q
    ||||||| || |||||||||||||||||||||||||||    
T  6590575 acctatgtttaatttgctaatgaatttgatgaaatgta 6590612  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 173
Target Start/End: Original strand, 36768788 - 36768862
Alignment:
Q  99 tacaggttactggagatccaatgaaggtggttgcagttcaaagaaattttcgcaggtttggaattgaagaaatag 173  Q
    |||||||||||||||| |||  |||| |||||||||| || ||||||||  ||| |||||||||| |||||||||    
T  36768788 tacaggttactggagacccagggaagatggttgcagtccagagaaatttcggcaagtttggaattaaagaaatag 36768862  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 370
Target Start/End: Original strand, 37046524 - 37046587
Alignment:
Q  306 ttgttactgtttaatctgatttctgaggtcacctatggtttatttgctaatgaatttgatgaaat 370  Q
    ||||||||||||| ||||| | ||| ||| ||||||| || ||||||||||||||||||||||||    
T  37046524 ttgttactgtttattctgactgctg-ggttacctatgtttaatttgctaatgaatttgatgaaat 37046587  T

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