View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4650-Insertion-10 (Length: 280)
Name: NF4650-Insertion-10
Description: NF4650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4650-Insertion-10 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 49 - 274
Target Start/End: Original strand, 27255880 - 27256105
Alignment:
| Q |
49 |
aggaagagaaagtaaaattcataccactgaaaatcaaagcttcgcatgtaaccgaaagtgaaacaatattgcttgctaacttcttgattttgaaggtgtt |
148 |
Q |
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| T |
27255880 |
aggaagagaaagtaaaattcataccactaaaaatcaaagcttcgcgtgtaaccgaaagtgaaacaatattgcttgctaacttcttgatattgaaggtgtt |
27255979 |
T |
|
| Q |
149 |
atgtgactgtagaaaaacaaactttagaagcattagcatttgaaaaacaaactaagaacaaatattttgatgaaaaatgagagttagttatcaaatattt |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27255980 |
atgtgactgtagaaaaacaaactttagaagcattagcatttgaaaaacaaactaagaacaaatattttgatgaaaaatgagagttagttatcaaatattt |
27256079 |
T |
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| Q |
249 |
tggtagaagtacactgactaagaact |
274 |
Q |
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|||||||||||||| ||||||||||| |
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| T |
27256080 |
tggtagaagtacacagactaagaact |
27256105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 49 - 280
Target Start/End: Original strand, 21199860 - 21200080
Alignment:
| Q |
49 |
aggaagagaaagtaaaattcataccactgaaaatcaaagcttcgcatgtaaccgaaagtgaaacaatattgcttgctaacttcttgattttgaaggtgtt |
148 |
Q |
| |
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|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
21199860 |
aggaggagaaagtaaaattcataccactaaaaatcaaagcttcgcatgtaaccgaaagtgaaacaatattgcttg-----------attttgaaggtgtt |
21199948 |
T |
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| Q |
149 |
atgtgactgtagaaaaacaaactttagaagcattagcatttgaaaaacaaactaagaacaaatattttgatgaaaaatgagagttagttatcaaatattt |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21199949 |
atgtgactgtagaaaaacaaactttagaagcattagcatttgaaaaacaaactaagaacaaatattttgatgaaaaatgagagttagttatcaaatattt |
21200048 |
T |
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| Q |
249 |
tggtagaagtacactgactaagaacttaccag |
280 |
Q |
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|||||||||||||| ||||||||||||||||| |
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| T |
21200049 |
tggtagaagtacacagactaagaacttaccag |
21200080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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