View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4650-Insertion-12 (Length: 377)
Name: NF4650-Insertion-12
Description: NF4650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4650-Insertion-12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 40022356 - 40022529
Alignment:
| Q |
8 |
atttcaaataagttatttgaatagaccaataataatttggaggttccatcgattcaatctctagccataatcctatcgcattgctcacaacactctaact |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
40022356 |
atttcaaataagttatttgaatagaccaataataatttggaggttccaacgattcaatctctagccataatcctatcgcattgctcacaacactctaagt |
40022455 |
T |
|
| Q |
108 |
gcactttgtaatgagattgtattcaaaagtcgcacgttgaactatttaaattggaaaagatattgagagtataa |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
40022456 |
acactttgtaatgagattgtattcaaaagtcgcacgtggaactatttaaattggaaaagatattgagagtataa |
40022529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 255 - 377
Target Start/End: Original strand, 40022603 - 40022725
Alignment:
| Q |
255 |
atctatattccatatagtnnnnnnnntatctatattacatatgtgtataataaatttagatgaaagatggctttatgaaagtggaactttcaaaatatat |
354 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40022603 |
atctatattccatatagtaaaaaaaatatctatattacatatgtgtataataaatttagatgaaaaatggctttatgaaagtggaactttcaaaatatat |
40022702 |
T |
|
| Q |
355 |
taatctattattttgcacactta |
377 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
40022703 |
taatctattattttgcacactta |
40022725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University