View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4650-Insertion-2 (Length: 1055)
Name: NF4650-Insertion-2
Description: NF4650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4650-Insertion-2 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 84 - 418
Target Start/End: Original strand, 8239985 - 8240328
Alignment:
| Q |
84 |
acaaagctcctctttgatctcttccaaaattcccatatcttccacatccttgacattttcatatatagcttctagtctctactccgtatacaagaggtgc |
183 |
Q |
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| T |
8239985 |
acaaagctcctctttgatctcttccaaaattcccatatcttccacatccttgacattttcatatatagcttctagtctctaccccgtatgcaagaggtgc |
8240084 |
T |
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| Q |
184 |
tggagtgtcaagtaactccttaatcgtattctcatcgaaccaaatatctttcccacgaacatatgacttgaataaa---------attctcttttggtat |
274 |
Q |
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| T |
8240085 |
tggagtgtcaagtaactcattaatcgtattctcatcgaaccaaatatctttcccacgaacatatgacttgaacatatcttttttctttctcttttggtat |
8240184 |
T |
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| Q |
275 |
gcattcgaataatattcaatggcaagtgaacaatttcactcctttgctaacccatttaatttcaaccaattcctcttctcaagtgcttccttaattccct |
374 |
Q |
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| T |
8240185 |
gcattcgaataaaattcaatggcaagtgaacaatttcgctcctttgctaacccatttaatttcaaccaattcctcttctcaagtgcttccttaattccct |
8240284 |
T |
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| Q |
375 |
caatgagatttttctcaagagagaatgatctcttttcaagaaag |
418 |
Q |
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| T |
8240285 |
caatgagatttttctcaagagagaatgatctcttttcaacaaag |
8240328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 783 - 1049
Target Start/End: Original strand, 8240857 - 8241126
Alignment:
| Q |
783 |
tagtgttataagcctctagaaaatatggaataagaattgctagagtttgtttcctgtgaaatttcacattgtaaaaccttagctttcc----aataatct |
878 |
Q |
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| T |
8240857 |
tagtgttataagcctctagaaaatatgga-taagaattgctagagtttgtttcctgtgaaatttcacattgtaaaacctcagttttcctgtcaataatca |
8240955 |
T |
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| Q |
879 |
cataagcctcaccaagtttcttagaaatagcatttatccaaaaaagttgttcctctcctgttttcctgacagtttcagcgtattggtcaaggtgccactg |
978 |
Q |
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| T |
8240956 |
cttaagcctcaccaagtttcttagaaatagcatttatccaaaaaagttgttcctctcctgttttcctgacagtttcagcgtattggtcaaggtgccactg |
8241055 |
T |
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| Q |
979 |
agtctcagat-aaatttcttgaaaggcttcagccatccaggtgacttcttactttctcgtactcatagaagg |
1049 |
Q |
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| T |
8241056 |
agtctcagataaaatttcttgaaaggcttcagccatccaggtga-ttctttctttctcgtactcatagaagg |
8241126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 8238369 - 8238448
Alignment:
| Q |
8 |
caacataaatgaaataacaaataaaaccacggttaatagatgaatgagcccttttatttttcttctatatatccatacaa |
87 |
Q |
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| T |
8238369 |
caacataaatgaaataacaaatataaccacggttaatagatgaatgagccctttcatttttcttctatatatccatacaa |
8238448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 8e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 34837472 - 34837546
Alignment:
| Q |
13 |
taaatgaaataacaaataaaaccacggttaatagatgaatgagcccttttatttttcttctatatatccatacaa |
87 |
Q |
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| T |
34837472 |
taaatgaaataacaaataaaaccacagttaatagatgaatgagtcctttcatttttcttctatatatccatacaa |
34837546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 28966089 - 28966137
Alignment:
| Q |
39 |
gttaatagatgaatgagcccttttatttttcttctatatatccatacaa |
87 |
Q |
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| T |
28966089 |
gttaatagatgaatgagacctttcatttttcttctatatatccatacaa |
28966137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 394
Target Start/End: Original strand, 31215128 - 31215226
Alignment:
| Q |
296 |
gcaagtgaacaatttcactcctttgctaacccatttaatttcaaccaattcctcttctcaagtgcttccttaattccctcaatgagatttttctcaaga |
394 |
Q |
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| T |
31215128 |
gcaagcgaacgattgcactcttttgccaacccattcaattccaaccaacttctcctctcaagcgcttccttaattccttcaattgcatttttctcaaga |
31215226 |
T |
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