View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4650-Insertion-5 (Length: 745)
Name: NF4650-Insertion-5
Description: NF4650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4650-Insertion-5 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 683; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 683; E-Value: 0
Query Start/End: Original strand, 8 - 745
Target Start/End: Complemental strand, 52180378 - 52179641
Alignment:
| Q |
8 |
tttactaggtaacccaatttgtgtccaaaatcggtacccatacaccactgaacaaaccaacgtagagaacaatatagccaacacttgaagcgattgtgaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52180378 |
tttactaggtaacccaatttgtgtccaaaatcggtacccataaaccactgaacaaaccaacgtagagaacaatatagccaacacttgaagcgattgtgaa |
52180279 |
T |
|
| Q |
108 |
aactccagccataaatatgacattatgagaataatcgagttgttaaataatctaaaaaacgacaattttctttcggtcaaaacaatgaaaattgtcctaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52180278 |
aactccagccataaatatgacattatgagaataatcgagttgttaaataatctaaaaaacgacaattttctttcggtcaaaacaatgaaaattgtcctaa |
52180179 |
T |
|
| Q |
208 |
tcatgtgaagataacgagagagataaaaagcataagaccaaaagaaaacacgacccgatggacgaatgcccaatgggaaacatagtaaccattcgaatgg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52180178 |
tcatgtgaagataacgagagagataaaaagcatatgaccaaaagaaaacacgacccgatggacgaatgcccaatgggaaacatagtaaccattcgaatgg |
52180079 |
T |
|
| Q |
308 |
tgtggttcgggttcgtttccaaagccaacgagtgtcccgaacctcagcttcagcagagaaaaacatgccgaaaaatattgttagggagatcaatgacatg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
52180078 |
tgtggttcgggttcgtttccaaagccaacgagtgtcccgaacctcagcttcagcagagaaaaacatgccgaaaaatattgttagggagattaatgacatg |
52179979 |
T |
|
| Q |
408 |
gagagattatgaattgctgggaatggacctaaaggtacagggcgcagtctccgacatagtttaaggatgacgtggatagttaccgtgatggagatgtaaa |
507 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52179978 |
gagagactatgaattgctggtaatggacctaaaggtacagggcgcagtctccgacatagtttaaggatgacgtggatagttaccgtgatggagatgtaaa |
52179879 |
T |
|
| Q |
508 |
agaatatggcggagatgagaaaccaccatgtggctccccatgatagggcaggactccaccggaatgaaacaattgatgggtgatctagtagccaatagtt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52179878 |
agaatatggcggagatgagaaaccaccatgtggctccccatgatagggcaggactccaccggaatgaaacaattgatgggtgatctagtagccaatagtt |
52179779 |
T |
|
| Q |
608 |
aagattctcctttgtaaactcgagcattgaatgtgtttgtgacattgtgtaattttcttggtgttgtactattgtaacggnnnnnnnnnggaagttgcta |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
52179778 |
aagattctcctttgtaaactcgagcattgaatatgtttgtgacattgtgtaattttcttggtgttgtactattgtaacgaattttttttggaagttgcta |
52179679 |
T |
|
| Q |
708 |
agatgattatataagagtggaatttggattataaattg |
745 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52179678 |
agatgattatataagagtggaatttggattataaattg |
52179641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 240 - 314
Target Start/End: Complemental strand, 6665252 - 6665178
Alignment:
| Q |
240 |
taagaccaaaagaaaacacgacccgatggacgaatgcccaatgggaaacatagtaaccattcgaatggtgtggtt |
314 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| || || | ||||||||| || |||||||| || || |||||| |
|
|
| T |
6665252 |
taagaccagaagaaaacacgaccagatggacgcataccaagtgggaaacaaaggaaccattcaaaaggggtggtt |
6665178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University