View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4650-Insertion-6 (Length: 703)

Name: NF4650-Insertion-6
Description: NF4650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4650-Insertion-6
NF4650-Insertion-6
[»] chr1 (20 HSPs)
chr1 (38-494)||(11142418-11142879)
chr1 (38-494)||(10177646-10178104)
chr1 (37-494)||(10406065-10406524)
chr1 (91-494)||(19313183-19313589)
chr1 (38-494)||(23614378-23614838)
chr1 (151-494)||(1600460-1600810)
chr1 (249-494)||(44961412-44961657)
chr1 (234-369)||(15757685-15757820)
chr1 (234-369)||(10620072-10620207)
chr1 (312-452)||(30950759-30950901)
chr1 (312-438)||(29799018-29799145)
chr1 (104-164)||(29799171-29799231)
chr1 (324-385)||(28403123-28403184)
chr1 (90-160)||(44960870-44960944)
chr1 (252-451)||(47367825-47368026)
chr1 (127-161)||(47367696-47367730)
chr1 (318-414)||(33240849-33240946)
chr1 (299-438)||(46515604-46515741)
chr1 (234-322)||(52111063-52111149)
chr1 (127-167)||(29357169-29357209)
[»] chr4 (12 HSPs)
chr4 (42-494)||(8745591-8746048)
chr4 (38-494)||(48861736-48862196)
chr4 (106-494)||(48840986-48841360)
chr4 (234-369)||(43892524-43892659)
chr4 (251-384)||(54165954-54166087)
chr4 (312-452)||(22786033-22786174)
chr4 (234-450)||(21790701-21790919)
chr4 (312-452)||(6016761-6016902)
chr4 (312-452)||(2407160-2407302)
chr4 (273-384)||(52628260-52628371)
chr4 (105-168)||(52628085-52628148)
chr4 (104-161)||(22785947-22786004)
[»] scaffold0005 (1 HSPs)
scaffold0005 (38-494)||(292145-292606)
[»] chr7 (15 HSPs)
chr7 (101-494)||(29715722-29716117)
chr7 (249-450)||(46211599-46211799)
chr7 (234-450)||(48609027-48609242)
chr7 (234-424)||(758838-759028)
chr7 (235-450)||(83553-83768)
chr7 (234-369)||(39719888-39720023)
chr7 (275-424)||(34659362-34659512)
chr7 (312-452)||(13465463-13465605)
chr7 (312-452)||(28491320-28491462)
chr7 (274-385)||(37202790-37202901)
chr7 (372-452)||(25592197-25592278)
chr7 (119-168)||(25591964-25592013)
chr7 (312-385)||(25439582-25439653)
chr7 (104-168)||(34658913-34658977)
chr7 (97-167)||(45855377-45855447)
[»] chr8 (18 HSPs)
chr8 (101-494)||(43115014-43115410)
chr8 (233-494)||(38699641-38699902)
chr8 (234-494)||(13541312-13541571)
chr8 (234-494)||(13682902-13683161)
chr8 (234-369)||(21441595-21441730)
chr8 (249-369)||(4072229-4072349)
chr8 (234-369)||(41323183-41323318)
chr8 (273-384)||(38172793-38172904)
chr8 (312-452)||(12491571-12491713)
chr8 (299-424)||(18881850-18881976)
chr8 (273-383)||(40118110-40118219)
chr8 (315-368)||(33613707-33613760)
chr8 (273-452)||(41570407-41570587)
chr8 (90-164)||(32415697-32415771)
chr8 (38-81)||(43114947-43114990)
chr8 (90-140)||(13541645-13541695)
chr8 (90-140)||(13682778-13682828)
chr8 (104-168)||(41570233-41570297)
[»] chr3 (16 HSPs)
chr3 (38-494)||(16152039-16152499)
chr3 (234-450)||(17652909-17653124)
chr3 (249-369)||(46823828-46823948)
chr3 (234-369)||(21295941-21296076)
chr3 (371-479)||(11027801-11027909)
chr3 (386-494)||(8554780-8554885)
chr3 (312-452)||(40763818-40763960)
chr3 (312-452)||(20843138-20843279)
chr3 (428-494)||(8832884-8832950)
chr3 (312-451)||(3458028-3458168)
chr3 (211-340)||(11027914-11028047)
chr3 (38-161)||(11033977-11034101)
chr3 (343-452)||(52403228-52403338)
chr3 (127-167)||(35061885-35061925)
chr3 (104-161)||(20843308-20843365)
chr3 (299-413)||(35106481-35106593)
[»] chr2 (10 HSPs)
chr2 (90-488)||(4435053-4435455)
chr2 (276-494)||(38881702-38881919)
chr2 (285-452)||(42799106-42799275)
chr2 (312-452)||(16546359-16546501)
chr2 (314-439)||(39070158-39070285)
chr2 (319-452)||(45655897-45656031)
chr2 (312-439)||(37614596-37614727)
chr2 (118-153)||(39070355-39070390)
chr2 (349-451)||(14802670-14802774)
chr2 (118-155)||(16546287-16546324)
[»] chr5 (13 HSPs)
chr5 (274-494)||(17695787-17696007)
chr5 (129-494)||(41639950-41640315)
chr5 (272-491)||(34034070-34034289)
chr5 (234-369)||(17768978-17769113)
chr5 (234-369)||(13517507-13517642)
chr5 (234-450)||(16908575-16908790)
chr5 (312-438)||(40528123-40528250)
chr5 (38-198)||(34033815-34033976)
chr5 (327-413)||(40360995-40361082)
chr5 (343-432)||(7008942-7009032)
chr5 (280-362)||(19948860-19948942)
chr5 (118-155)||(16908873-16908910)
chr5 (98-198)||(17698708-17698808)
[»] scaffold0481 (2 HSPs)
scaffold0481 (101-494)||(6496-6877)
scaffold0481 (38-81)||(6431-6474)
[»] chr6 (11 HSPs)
chr6 (272-450)||(29363467-29363644)
chr6 (234-387)||(34729784-34729937)
chr6 (312-452)||(1780593-1780735)
chr6 (285-385)||(24428798-24428901)
chr6 (275-362)||(29486443-29486529)
chr6 (109-164)||(29486274-29486329)
chr6 (343-452)||(22956394-22956504)
chr6 (343-452)||(23831888-23831998)
chr6 (119-167)||(22956659-22956707)
chr6 (119-167)||(23831685-23831733)
chr6 (41-81)||(27673821-27673861)
[»] scaffold1554 (2 HSPs)
scaffold1554 (321-439)||(811-929)
scaffold1554 (253-304)||(756-807)
[»] scaffold0186 (1 HSPs)
scaffold0186 (251-385)||(22670-22804)
[»] scaffold1709 (1 HSPs)
scaffold1709 (37-257)||(1225-1451)
[»] scaffold0002 (2 HSPs)
scaffold0002 (275-401)||(428333-428459)
scaffold0002 (118-198)||(428539-428620)
[»] scaffold0110 (2 HSPs)
scaffold0110 (273-363)||(6919-7009)
scaffold0110 (105-168)||(7119-7182)


Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 38 - 494
Target Start/End: Original strand, 11142418 - 11142879
Alignment:
Q  38 caggggcgtagctcttcacatgggaggggtagtcttggctacccnnnnnnnntattatacttgaagtggtcggtatgaacttatatccggctacctcaaa 137  Q
    |||||||||||| ||||||||||||||||||| |||||||||||        |||||||||| |||||||||||||| |||||||| |||||||||||||    
T  11142418 caggggcgtagcccttcacatgggaggggtagccttggctaccccaaaaaaatattatacttaaagtggtcggtatgtacttatattcggctacctcaaa 11142517  T
Q  138 taataaacattgagctactccaaataagttccgtcacaaaaatttacataaataataaagtnnnnnnntta-ccacaagactaatagatttatttgt--- 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||| |||||| ||| ||||||||||||||       
T  11142518 taataaacattgagctactccaaataagttccgtcacaaaaatttacataaataataaagtaaaaaaattaaccacaaaactgatagatttatttgtatt 11142617  T
Q  234 -gtttgatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgag 332  Q
     |||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11142618 ggtttgatactcccgatctaaataacaacaatagagaagcctttttcaacaataaaaattatcaagacaatatttatagacaaattaaatggacaatgag 11142717  T
Q  333 tttcttgcgaataacctatttatttacatttgaaaaggcattattaatctattattaaacagacaattattgatgaaattgggttcttgaaacacatttt 432  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11142718 tttcttgcgaataacctattcatttacatttgaaaagacattattaatctattattaaacagacaattattgataaaattgggttcttgaaacacatttt 11142817  T
Q  433 acccaacgtttctaaatagcgatttttatgttaagtttctaagatttgttaattttagtcct 494  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11142818 acccaacgtttctaaatagcgatttttatgttaagtttataagatttgttaattttagtcct 11142879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 38 - 494
Target Start/End: Original strand, 10177646 - 10178104
Alignment:
Q  38 caggggcgtagctcttcacatgggaggggtagtcttggctacccnnnnnnnntattatacttgaagtggtcggtatgaacttatatccggctacctcaaa 137  Q
    |||||||||||| ||||| ||||||||||||| |||||||||||         |  || |||||||||||||||||| | || ||||| |||||  ||||    
T  10177646 caggggcgtagcccttcatatgggaggggtagccttggctaccccaaaaaaaaaaaat-cttgaagtggtcggtatgtatttttatccagctactccaaa 10177744  T
Q  138 taataaacattgagctactccaaataagttccgtcacaaaaatttacataaataataaagtnnnnnnnttaccacaagactaatagatttatttgt---- 233  Q
    ||||||| |||||||||| | |||||| ||||||  |||||||| ||||||||||||||||       |||| |||||| | ||||||||||||||        
T  10177745 taataaatattgagctaccctaaataaattccgttgcaaaaattaacataaataataaagtaaaaaa-ttactacaagattgatagatttatttgtattt 10177843  T
Q  234 gtttgatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagt 333  Q
    ||||||||||||||||||||||||||||| |||| || | ||||||||||||||||||||| ||||||||| | || |||||| |||||||||  |||||    
T  10177844 gtttgatactcccgatctcaataacaacaatagagaaacttttttcaacaataaaaattatcaagacaatagtcattgacaaactaaatggacggtgagt 10177943  T
Q  334 ttcttgcgaataacctatttatttacatttgaaaaggcattattaatctattattaaacagacaattattgatgaaattgggttcttgaaacacatttta 433  Q
    ||||||| ||||||||||||||| |||||||||||  |||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||     
T  10177944 ttcttgcaaataacctatttattcacatttgaaaaaacattattaatctattattaaacagtcaattattgatgaaattgagttcttgaaacgcattttg 10178043  T
Q  434 cccaacgtttctaaatagcgatttttatgttaagtttctaagatttgttaattttagtcct 494  Q
    ||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10178044 cccgacgtttttaaatagcgatttttatgttaattttctaagatttgttaattttagtcct 10178104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 37 - 494
Target Start/End: Complemental strand, 10406524 - 10406065
Alignment:
Q  37 acaggggcgtagctcttcacatgggaggggtagtcttggctacccnnnnnnnntattatacttgaagtggtcggtatgaacttatatccggctacctcaa 136  Q
    |||||||| |||| ||||| ||||||||||||| |||||||||||         | ||| |||||||||||||||||| | || |||||||||||  |||    
T  10406524 acaggggcatagcccttcatatgggaggggtagccttggctacccaaaaaaaaaaatattcttgaagtggtcggtatgtatttttatccggctactccaa 10406425  T
Q  137 ataataaacattgagctactccaaataagttccgtcacaaaaatttacataaataataaagtnnnnnnnttaccacaagactaatagatttatttgt--- 233  Q
    |||||||| |||||| |||  |||| || |||| |   |||||||   ||||||||||||||       |||| |||||| | ||||||||||||||       
T  10406424 ataataaatattgagttacctcaaacaaattccattgtaaaaattagtataaataataaagtaaaaaaattactacaagattgatagatttatttgtatt 10406325  T
Q  234 -gtttgatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgag 332  Q
     ||||||||||||||||||||||||||||  |||| || | |||||||||||||| |||||| ||||||||| | || |||||| |||||||||| ||||    
T  10406324 tgtttgatactcccgatctcaataacaac--tagagaaacttttttcaacaataataattatcaagacaatagtcattgacaaactaaatggacagtgag 10406227  T
Q  333 tttcttgcgaataacctatttatttacatttgaaaaggcattattaatctattattaaacagacaattattgatgaaattgggttcttgaaacacatttt 432  Q
    |||||||| ||||||||||||||||||||| |||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||     
T  10406226 tttcttgcaaataacctatttatttacattcgaaaaaacattattaatctattattaaacagtcaattattgatgaaattgggttcttgaaacgcatttc 10406127  T
Q  433 acccaacgtttctaaatagcgatttttatgttaagtttctaagatttgttaattttagtcct 494  Q
     ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10406126 gcccgacgtttctaaatagcgttttttatgttaagtttctaagatttgttaattttagtcct 10406065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 91 - 494
Target Start/End: Original strand, 19313183 - 19313589
Alignment:
Q  91 attatacttgaagtggtcggtatgaacttatatccggctacctcaaataataaacattgagctactccaaataagttccgtcacaaaaatttacataaat 190  Q
    ||||| |||||||||||||||||| |  | |||||||||||| ||||||||||| |||||||||| ||||| |  ||||||  |||| ||| ||||||||    
T  19313183 attattcttgaagtggtcggtatgtatatttatccggctaccccaaataataaatattgagctaccccaaacacattccgttgcaaatattaacataaat 19313282  T
Q  191 aataaagtnnnnnnnttaccacaagactaatagat--ttatttgtgtttgatactcccgatctcaataacaacagtagataagcctttttcaacaataaa 288  Q
    ||||||||       |||| |||||| | || |||  || | | | |||||||||||||||||||||||||||| |||| || | |||||||||||||||    
T  19313283 aataaagtaaaaaaattactacaagattgatggatatttgtatttctttgatactcccgatctcaataacaacaatagagaaacttttttcaacaataaa 19313382  T
Q  289 aattattaagacaatatttatagacaaattaaatggacaatgagtttcttgcgaataacctatttatttacatttgaaaaggcattattaatctattatt 388  Q
    |||||| || |||||| | ||||||||||||||| || | |||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||    
T  19313383 aattatcaaaacaatagtcatagacaaattaaatagatagtgagtttcttgcaaataacttatttatttacatttgaaaagacattattaatctattatt 19313482  T
Q  389 aaacagacaattattgatgaaattgggttcttga-aacacattttacccaacgtttctaaatagcgatttttatgttaagtttctaagatttgttaattt 487  Q
    |||||| ||||||||||||||||||| ||| |||     |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19313483 aaacagtcaattattgatgaaattggattcctgagggtgcattttgcccaacgtttctaaatagcgatttttatgttaagtttctaagattcgttaattt 19313582  T
Q  488 tagtcct 494  Q
    |||||||    
T  19313583 tagtcct 19313589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 38 - 494
Target Start/End: Original strand, 23614378 - 23614838
Alignment:
Q  38 caggggcgtagctcttcacatgggaggggtagtcttggctacccnnnnnnnn-tattatacttgaagtggtcggtatgaacttatatccggctacctcaa 136  Q
    |||||||||||| ||||| ||||||||||||| |||||||||||         |||||| |||||| |  |||||||  | |||||||||||||||  ||    
T  23614378 caggggcgtagcccttcatatgggaggggtagccttggctaccccaaaaaaagtattattcttgaattaatcggtatatatttatatccggctaccctaa 23614477  T
Q  137 ataataaacattgagctactccaaataagttccgtcacaaaaatttacataaataataaagtnnnnnnnttaccacaagactaatagatttatttgt--- 233  Q
    |||||||||||||||||||  ||||||||||  ||  ||||||||  |||||||||||||||       | || |||||| | ||||||||||||||       
T  23614478 ataataaacattgagctacctcaaataagtttagttgcaaaaattagcataaataataaagtaaaaaact-actacaagattgatagatttatttgtatt 23614576  T
Q  234 -gtttgatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgag 332  Q
     |||||||| |  || |||||||||||||| || | || ||||||||||||| ||||||||  ||||||||| |  |||||||||||||  |||||||||    
T  23614577 ggtttgatattttcggtctcaataacaacaataaagaaacctttttcaacaacaaaaattaacaagacaatagtcgtagacaaattaaacagacaatgag 23614676  T
Q  333 tttcttgcgaataacctatttatttacatttgaaaaggcattattaatctattattaaacagacaattattgatgaaattgggttcttgaaacacatttt 432  Q
    |||||||| |||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||    
T  23614677 tttcttgcaaataacatatttatttacatttaaaaagtcattattaatctattattaaacagacaattattgatgaaattgggttcttcaaatgcatttt 23614776  T
Q  433 acccaacgtttctaaatagcgatttttatgttaagtttctaagatttgttaattttagtcct 494  Q
     ||||| ||||  ||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  23614777 gcccaatgttttaaaatagcgaattttatgttaagtttttaagatttgttaattttagtcct 23614838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 151 - 494
Target Start/End: Complemental strand, 1600810 - 1600460
Alignment:
Q  151 gctactccaaataagttccgtcacaaaaatttacataaataataaagtnnnnnnnttaccacaagactaatagatttatttgt----gtttgatactccc 246  Q
    ||||| |||||||||||  ||  ||||||||  |||||||||||||||       |||| |||||| | |||||||||||||     ||||||| ||  |    
T  1600810 gctaccccaaataagtttagttgcaaaaattagcataaataataaagtaaaaaaattactacaagattgatagatttatttgcattggtttgatgctttc 1600711  T
Q  247 gatctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagtttcttgcgaataa 346  Q
    | |||||||||||||| |||| || || |||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||| |||||    
T  1600710 ggtctcaataacaacaatagagaaacccttttcaacaataaaaattatcaagacaatagtcatagacaaattaaatggacaatgagtttcttgcaaataa 1600611  T
Q  347 cctatttatttacatttgaaaag---gcattattaatctattattaaacagacaattattgatgaaattgggttcttgaaacacattttacccaacgttt 443  Q
    |||||||||||||||||||||||    ||| ||||||||||||||||| | |||||||||||||||||||||||| ||||||  |||||||||||| |||    
T  1600610 cctatttatttacatttgaaaagaaatcatcattaatctattattaaataaacaattattgatgaaattgggttcctgaaacgtattttacccaacattt 1600511  T
Q  444 ctaaatagcgatttttatgttaagtttctaagatttgttaattttagtcct 494  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  1600510 ctaaatagcgatttttatgttaagttcataagatttgttaattttagtcct 1600460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 249 - 494
Target Start/End: Original strand, 44961412 - 44961657
Alignment:
Q  249 tctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagtttcttgcgaataacc 348  Q
    |||||||||||||| |||| || || ||||||||| |||||||||| ||||||||| | ||||||||||||||||||||||||||||||||| |||||||    
T  44961412 tctcaataacaacaatagagaaacccttttcaacagtaaaaattatcaagacaatagtcatagacaaattaaatggacaatgagtttcttgcaaataacc 44961511  T
Q  349 tatttatttacatttgaaaaggcattattaatctattattaaacagacaattattgatgaaattgggttcttgaaacacattttacccaacgtttctaaa 448  Q
    ||||||||||||||||||||| ||| ||||||||||||||||| | || ||||||||||||||||  ||| ||||||  |||||||||||| ||||||||    
T  44961512 tatttatttacatttgaaaagacatcattaatctattattaaataaacgattattgatgaaattgaattcctgaaacgtattttacccaacatttctaaa 44961611  T
Q  449 tagcgatttttatgttaagtttctaagatttgttaattttagtcct 494  Q
    ||| |||||| |||||||||| ||||||||||||||||||||||||    
T  44961612 tagtgattttcatgttaagttcctaagatttgttaattttagtcct 44961657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 234 - 369
Target Start/End: Original strand, 15757685 - 15757820
Alignment:
Q  234 gtttgatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagt 333  Q
    |||||||||| ||  |||||||||||||| || | || |||||||||||||||||||| || ||||||||| | |||||||||||||||| |||||||||    
T  15757685 gtttgatacttcccgtctcaataacaacaataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagt 15757784  T
Q  334 ttcttgcgaataacctatttatttacatttgaaaag 369  Q
    ||||||| ||||||||||||||||||||||||||||    
T  15757785 ttcttgcaaataacctatttatttacatttgaaaag 15757820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 234 - 369
Target Start/End: Original strand, 10620072 - 10620207
Alignment:
Q  234 gtttgatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagt 333  Q
    |||||||||| ||  |||||||||||||| || | || |||||||||||||||||||| || ||||||||| | |||||||||||||||| |||||||||    
T  10620072 gtttgatacttcccgtctcaataacaacaataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagt 10620171  T
Q  334 ttcttgcgaataacctatttatttacatttgaaaag 369  Q
    ||||||  ||||||||||||||||||||||||||||    
T  10620172 ttcttgaaaataacctatttatttacatttgaaaag 10620207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 312 - 452
Target Start/End: Complemental strand, 30950901 - 30950759
Alignment:
Q  312 acaaattaaatggacaatgagtttcttgcgaataacctattt-atttacatttgaaaaggcattattaatcta-ttattaaacagacaattattgatgaa 409  Q
    |||||||||||||||| |||||||||||| ||||||||||||  ||||||||  ||||| ||||||||||||| ||| ||||| | ||||||| ||| ||    
T  30950901 acaaattaaatggacattgagtttcttgcaaataacctatttgttttacattgaaaaagacattattaatctatttagtaaacggtcaattatggataaa 30950802  T
Q  410 attgggttcttgaaacacattttacccaacgtttctaaatagc 452  Q
    ||||| |||||||||  |||||||| |||| ||| ||||||||    
T  30950801 attggtttcttgaaatgcattttacacaacttttttaaatagc 30950759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 312 - 438
Target Start/End: Complemental strand, 29799145 - 29799018
Alignment:
Q  312 acaaattaaatggacaatgagtttcttgcgaataacctatttatttacatttgaaaaggcattattaatcta-ttattaaacagacaattattgatgaaa 410  Q
    |||||||||||||| | |||||||||| | |||||||||||| |||||||| | |||| ||||||||||| | ||| ||||    ||| ||| ||| |||    
T  29799145 acaaattaaatggatattgagtttcttacaaataacctatttgtttacattgggaaagacattattaatcaatttagtaaatgatcaaatatagataaaa 29799046  T
Q  411 ttgggttcttgaaacacattttacccaa 438  Q
    |||| |||||||||  ||||||||||||    
T  29799045 ttggcttcttgaaatgcattttacccaa 29799018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 29799231 - 29799171
Alignment:
Q  104 tggtcggtatgaacttatatccggctacctcaaataataaacattgagctactccaaataa 164  Q
    |||| ||||| || |||||| |||||||| |||||||||||||||||| ||||||||||||    
T  29799231 tggttggtataaatttatattcggctaccccaaataataaacattgagttactccaaataa 29799171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 324 - 385
Target Start/End: Original strand, 28403123 - 28403184
Alignment:
Q  324 gacaatgagtttcttgcgaataacctatttatttacatttgaaaaggcattattaatctatt 385  Q
    ||||||||||||| ||| |||||||||||| ||||||||  ||||| ||||||| |||||||    
T  28403123 gacaatgagtttcatgcaaataacctatttgtttacattgaaaaagacattattgatctatt 28403184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 44960870 - 44960944
Alignment:
Q  90 tattatacttgaagtggtcggtatgaacttatat----ccggctacctcaaataataaacattgagctactccaa 160  Q
    |||||| |||||||||||||||||| | ||||||    ||||||||| ||||||||||| |||||||||| ||||    
T  44960870 tattattcttgaagtggtcggtatgtatttatatccggccggctaccccaaataataaagattgagctaccccaa 44960944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 252 - 451
Target Start/End: Original strand, 47367825 - 47368026
Alignment:
Q  252 caataacaacagtagataagcctttttcaacaat-aaaaattattaagacaatatttatagacaaattaaatggacaatgagtttcttgcgaataaccta 350  Q
    ||||||||||  |||| ||  |||||| |||||| ||||||||| ||| ||||| ||||| ||| || ||| || ||||||||||||||| ||||  |||    
T  47367825 caataacaactatagagaaaacttttttaacaattaaaaattatcaaggcaatagttataaacatatcaaacgggcaatgagtttcttgcaaatagtcta 47367924  T
Q  351 tttatttacatttgaaaaggcattattaatctattat-taaacagacaattattgatgaaattgggttcttgaaacacattttacccaacgtttctaaat 449  Q
     || |||||||| || ||| |||||| | | |||| | ||||||  ||| ||| ||| ||||||  || ||||||||||||||  ||||| ||| |||||    
T  47367925 attgtttacattggagaagacattatcattatattttgtaaacaatcaaatatggataaaattgcctttttgaaacacattttgtccaacttttttaaat 47368024  T
Q  450 ag 451  Q
    ||    
T  47368025 ag 47368026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 127 - 161
Target Start/End: Original strand, 47367696 - 47367730
Alignment:
Q  127 gctacctcaaataataaacattgagctactccaaa 161  Q
    ||||||||||||||||||||||||||||| |||||    
T  47367696 gctacctcaaataataaacattgagctaccccaaa 47367730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 414
Target Start/End: Complemental strand, 33240946 - 33240849
Alignment:
Q  318 taaatggacaatgagtttcttgcgaataacctatttatttacatttgaaaaggcattattaatcta-ttattaaacagacaattattgatgaaattgg 414  Q
    |||||||||| ||| ||| |||  ||| |||||||  |||||||| |||||  ||||||||||||| ||||||||||  ||||||| ||| |||||||    
T  33240946 taaatggacattgaatttattgaaaatgacctattagtttacattggaaaatacattattaatctatttattaaacactcaattatggataaaattgg 33240849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 299 - 438
Target Start/End: Original strand, 46515604 - 46515741
Alignment:
Q  299 acaatatttatagacaaattaaatggacaatgagtttcttgcgaataacctatttatttacatttgaaaaggcattattaatctatt-attaaacagaca 397  Q
    |||||| ||||| |||||||||| ||||||| ||||| |||  |||||| | ||| ||||||||  ||||  ||||| ||||||||| ||||||||| ||    
T  46515604 acaatagttataaacaaattaaaaggacaataagttt-ttgaaaataacttgtttgtttacattgaaaaa--cattaataatctatttattaaacagtca 46515700  T
Q  398 attattgatgaaattgggttcttgaaacacattttacccaa 438  Q
    || || ||| |||||| |||||| ||| || |||| |||||    
T  46515701 atcatggataaaattgagttcttaaaatacgttttgcccaa 46515741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 234 - 322
Target Start/End: Complemental strand, 52111149 - 52111063
Alignment:
Q  234 gtttgatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaat 322  Q
    ||||||||||  ||||||||||||||||  |||| ||  || ||||||||||||||||||| | || |||| | ||| |||||||||||    
T  52111149 gtttgatactttcgatctcaataacaac--tagagaaaactatttcaacaataaaaattatcatgaaaataatcataaacaaattaaat 52111063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 29357169 - 29357209
Alignment:
Q  127 gctacctcaaataataaacattgagctactccaaataagtt 167  Q
    |||||| ||||||||||| |||||||||| |||||||||||    
T  29357169 gctaccccaaataataaatattgagctaccccaaataagtt 29357209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 42 - 494
Target Start/End: Complemental strand, 8746048 - 8745591
Alignment:
Q  42 ggcgtagctcttcacatgggaggggtagtcttggctacccnnnnnnnn-tattatacttgaagtggtcggtatgaacttatatccggctacctcaaataa 140  Q
    |||||||| ||||||||||||||||||| |||||||||||         |||||||||| |||||||||||||| ||||||||| |||||||||||||||    
T  8746048 ggcgtagcccttcacatgggaggggtagccttggctaccccagaaaaaatattatacttaaagtggtcggtatgtacttatatctggctacctcaaataa 8745949  T
Q  141 taaacattgagctactccaaataagttccgtcacaaaaatttacataaataataaagtnnnnnnnttaccacaagactaatagatttatttgt----gtt 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||| ||||||||||||||    |||    
T  8745948 taaacattgagctactccaaataagttccgtcacaaaaatttacataaataataaagtaaaaaaaataccacaagactgatagatttatttgtattggtt 8745849  T
Q  237 tgatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagtttc 336  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  8745848 tgatactcccgatctcaataacaacaatagagaagcctttttcaacaataaaaattatcaagacaatattcatagacaaattaaatggacaatgagtttc 8745749  T
Q  337 ttgcgaataacctatttatttacatttgaaaaggcattattaatctattattaaacagacaattattgatgaaattgggttcttgaaacacattttaccc 436  Q
    || |||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||| |||    
T  8745748 ttacgaataacctatttatttacatttgaaaagacattattaatctattattaaataggcaattattgatgaaattgggttctcgaaacacattttgccc 8745649  T
Q  437 aacgtttctaaatagcgatttttatgttaagtttctaagatttgttaattttagtcct 494  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8745648 aacgtttctaaatagcgatttttatgttaattttctaagatttgttaattttagtcct 8745591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 38 - 494
Target Start/End: Original strand, 48861736 - 48862196
Alignment:
Q  38 caggggcgtagctcttcacatgggaggggtagtcttggctacccnnnnnnnn-tattatacttgaagtggtcggtatgaacttatatccggctacctcaa 136  Q
    |||||||||||| ||||| ||||||||||||| |||||||||||         |||||| |||||| |  |||||||  | |||||| |||||||| |||    
T  48861736 caggggcgtagcccttcatatgggaggggtagccttggctaccccaaaaaaagtattattcttgaattaatcggtatatatttatattcggctaccccaa 48861835  T
Q  137 ataataaacattgagctactccaaataagttccgtcacaaaaatttacataaataataaagtnnnnnnnttaccacaagactaatagatttatttgt--- 233  Q
    |||||||||||| |||||| |||||||||||  ||  ||||||||  |||||||||||||||       | || |||||| | ||||||||||||||       
T  48861836 ataataaacattaagctaccccaaataagtttagttgcaaaaattagcataaataataaagtaaaaaact-actacaagattgatagatttatttgtatt 48861934  T
Q  234 -gtttgatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgag 332  Q
     |||||||| |  || |||||||||||||| || | || ||||||||||||| ||||||||| ||||||||| |  |||||||||||||  |||||||||    
T  48861935 ggtttgatattttcggtctcaataacaacaataaagaaacctttttcaacaacaaaaattatcaagacaatagtcgtagacaaattaaacagacaatgag 48862034  T
Q  333 tttcttgcgaataacctatttatttacatttgaaaaggcattattaatctattattaaacagacaattattgatgaaattgggttcttgaaacacatttt 432  Q
    |||||||| |||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||    
T  48862035 tttcttgcaaataacatatttatttacatttaaaaagtcattattaatctattattaaacagacaattattgatgaaattgggttcttcaaatgcatttt 48862134  T
Q  433 acccaacgtttctaaatagcgatttttatgttaagtttctaagatttgttaattttagtcct 494  Q
      |||| ||||  ||||||||| ||||||||||||||| ||| |||||||||||||||||||    
T  48862135 gtccaatgttttaaaatagcgaattttatgttaagtttttaaaatttgttaattttagtcct 48862196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 106 - 494
Target Start/End: Original strand, 48840986 - 48841360
Alignment:
Q  106 gtcggtatgaacttatatccggctacctcaaataataaacattgagctactccaaataagttccgtcacaaaaatttacataaataataaagtnnnnnnn 205  Q
    ||||||||| | |||||||||||||||  ||||||||||||||||||||| ||||| | ||||| |   |||||||  |||||||||||||||           
T  48840986 gtcggtatgtatttatatccggctaccctaaataataaacattgagctaccccaaacacgttccattgtaaaaattagcataaataataaagtaaaaaag 48841085  T
Q  206 ttaccacaagactaatagatttatttgt----gtttgatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattattaagaca 301  Q
    |||| |||||| | || |||||||||||    |||||||||| |||||||||||||||| ||     || ||||||||||||||||||||||| ||||||    
T  48841086 ttactacaagattgatggatttatttgtattggtttgatacttccgatctcaataacaagag-----aaacctttttcaacaataaaaattatcaagaca 48841180  T
Q  302 atatttatagacaaattaaatggacaatgagtttcttgcgaataacctatttatttacatttgaaaaggcattattaatctattattaaacagacaatta 401  Q
    |   | |||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||           |||||    
T  48841181 ag--tcatagacaaattaaatggataatgggtttcttgcaaataacctatttatttacatttgaaaagacattattaatctatt-----------aatta 48841267  T
Q  402 ttgatgaaattgggttcttgaaacacattttacccaacgtttctaaatagcgatttttatgttaagtttctaagatttgttaattttagtcct 494  Q
    |||||||||||| |||| |||||| |||||| ||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||    
T  48841268 ttgatgaaattgagttcgtgaaacgcattttgcccaacgtttctaaatagcgaattttatgttaagttcctaaaatttgttaattttagtcct 48841360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 234 - 369
Target Start/End: Complemental strand, 43892659 - 43892524
Alignment:
Q  234 gtttgatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagt 333  Q
    |||||||||| ||  |||||||||||||| || | || |||||||||||||||||||| || ||||||||| | ||||||||||||||||  ||||||||    
T  43892659 gtttgatacttcccgtctcaataacaacaataaagaaacctttttcaacaataaaaataatcaagacaatagtcatagacaaattaaatgtgcaatgagt 43892560  T
Q  334 ttcttgcgaataacctatttatttacatttgaaaag 369  Q
    ||||||| ||||||||||||||||||||||||||||    
T  43892559 ttcttgcaaataacctatttatttacatttgaaaag 43892524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 251 - 384
Target Start/End: Complemental strand, 54166087 - 54165954
Alignment:
Q  251 tcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagtttcttgcgaataaccta 350  Q
    ||||||||||   |||||||  |||||||||||||||||||||| ||||||||||| ||| | |||||||||||||||||||||| |||| |||||||||    
T  54166087 tcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaataaattaaatggacaatgagtttattgcaaataaccta 54165988  T
Q  351 tttatttacatttgaaaaggcattattaatctat 384  Q
    ||  ||||||||  ||||  ||||||||||||||    
T  54165987 ttagtttacattgaaaaatacattattaatctat 54165954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 312 - 452
Target Start/End: Original strand, 22786033 - 22786174
Alignment:
Q  312 acaaattaaatggacaatgagtttcttgcgaataacctatttatttacatttgaaaaggcattattaatcta-ttattaaacagacaattattgatgaaa 410  Q
    |||| ||||||||||| ||| |||||||| |||||||||||| |||||||| |||||| ||||||||||||| ||| ||||| | | ||||| ||| |||    
T  22786033 acaatttaaatggacattgaatttcttgcaaataacctatttgtttacattggaaaagacattattaatctatttagtaaacggtcgattatggataaaa 22786132  T
Q  411 ttgggttcttgaaacacattttacccaacgtttctaaatagc 452  Q
    |||| |||||||||  ||||||||||||| ||| ||||||||    
T  22786133 ttggcttcttgaaatgcattttacccaacttttttaaatagc 22786174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 234 - 450
Target Start/End: Original strand, 21790701 - 21790919
Alignment:
Q  234 gtttgatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgag- 332  Q
    |||||||||| ||| |||||||| |||   |||| ||  |||||| |||  |||||||||||||||| ||| | ||| |||||| ||||||||||||||     
T  21790701 gtttgatacttccggtctcaatagcaattatagagaaaactttttaaacggtaaaaattattaagactatagtcataaacaaataaaatggacaatgagt 21790800  T
Q  333 -tttcttgcgaataacctatttatttacatttgaaaaggcattattaatcta-ttattaaacagacaattattgatgaaattgggttcttgaaacacatt 430  Q
     ||| |||| |||||||||||||||||| || |||||| ||||||||||||| ||| ||||||  ||||||| ||  ||||||  ||||| |||  ||||    
T  21790801 tttttttgcaaataacctatttatttac-ttggaaaagacattattaatctagttagtaaacaatcaattatggacaaaattgacttcttaaaatgcatt 21790899  T
Q  431 ttacccaacgtttctaaata 450  Q
    ||||||||| ||||||||||    
T  21790900 ttacccaacttttctaaata 21790919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 312 - 452
Target Start/End: Complemental strand, 6016902 - 6016761
Alignment:
Q  312 acaaattaaatggacaatgagtttcttgcgaataacctatttatttacatttgaaaaggcattattaatcta-ttattaaacagacaattattgatgaaa 410  Q
    |||| ||||||| ||| |||||||||||| |||||||||||| ||||||||  ||||| ||||||||||||| ||| ||||| | ||||||| ||| |||    
T  6016902 acaatttaaatgtacattgagtttcttgcaaataacctatttgtttacattgaaaaagacattattaatctatttagtaaacggtcaattatggataaaa 6016803  T
Q  411 ttgggttcttgaaacacattttacccaacgtttctaaatagc 452  Q
    |||| || ||||||  ||||||||||||| ||| ||||||||    
T  6016802 ttggcttattgaaatgcattttacccaacttttttaaatagc 6016761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 312 - 452
Target Start/End: Original strand, 2407160 - 2407302
Alignment:
Q  312 acaaattaaatggacaatgagtttcttgcgaataacctatttatttacatttg-aaaaggcattattaatcta-ttattaaacagacaattattgatgaa 409  Q
    |||| ||||||||||| ||| |||||||| |||||||||||| |||||||| | ||||| ||||||||||||| ||| ||||| | ||||||||||| ||    
T  2407160 acaatttaaatggacattgaatttcttgcaaataacctatttgtttacattggaaaaagacattattaatctatttagtaaacggtcaattattgataaa 2407259  T
Q  410 attgggttcttgaaacacattttacccaacgtttctaaatagc 452  Q
    ||||  |||||||||  |||||||| |||| ||| ||||||||    
T  2407260 attgacttcttgaaatgcattttactcaacttttttaaatagc 2407302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 273 - 384
Target Start/End: Original strand, 52628260 - 52628371
Alignment:
Q  273 ctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagtttcttgcgaataacctatttatttacatttgaaaaggca 372  Q
    |||| ||||||||||||||||| ||||||||| | ||| | |||||||||| ||||||||||| |||| |||||||||||  |||||||| |||||   |    
T  52628260 ctttgtcaacaataaaaattatcaagacaatagtcataaataaattaaatgaacaatgagtttattgcaaataacctattagtttacattggaaaatata 52628359  T
Q  373 ttattaatctat 384  Q
    ||||||||||||    
T  52628360 ttattaatctat 52628371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 52628085 - 52628148
Alignment:
Q  105 ggtcggtatgaacttatatccggctacctcaaataataaacattgagctactccaaataagttc 168  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  52628085 ggtcggtatgtatttatatccggctacctcaaataataaacattgagctaccccaaacaagttc 52628148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 22785947 - 22786004
Alignment:
Q  104 tggtcggtatgaacttatatccggctacctcaaataataaacattgagctactccaaa 161  Q
    |||| ||||| || |||| | |||||||| |||||||||||||||||||||| |||||    
T  22785947 tggttggtataaatttattttcggctaccccaaataataaacattgagctaccccaaa 22786004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 38 - 494
Target Start/End: Complemental strand, 292606 - 292145
Alignment:
Q  38 caggggcgtagctcttcacatgggaggggtagtcttggctacccnnnnnnnn-tattatacttgaagtggtcggtatgaacttatatccggctacctcaa 136  Q
    |||||||||||| ||||||||||||| ||||| |||||||||||         ||||||||||||||||||||||||| ||||||||||||||| | |||    
T  292606 caggggcgtagcccttcacatgggagaggtagccttggctaccccaagaaaaatattatacttgaagtggtcggtatgtacttatatccggctatcccaa 292507  T
Q  137 ataataaacattgagctactccaaataagttccgtcacaaaaatttacataaataataaagtnnnnnnnttaccacaagactaatagatttatttgt--- 233  Q
    ||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||       ||||||||||||| ||||||||||||||       
T  292506 ataataaacattgagttatttcaaataagttccgtcacaaaaatttacataaataataaagtaaaaaaattaccacaagactgatagatttatttgtatt 292407  T
Q  234 -gtttgatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgag 332  Q
     ||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||    
T  292406 ggtttgatactcccgatctcaataacaactatagagaagcctttttcaacaataaaaattatcaagacaatattcatagacaaattaaatgaacaatgag 292307  T
Q  333 tttcttgcgaataacctatttatttacatttgaaaaggcattattaatctattattaaacagacaattattgatgaaattgggttcttgaaacacatttt 432  Q
    |||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  292306 tttcttgcgaataacctatttatttatatttgaaaagacactattaatctattattaaacaggcaattattgatgaaattgggttcttgaaacacatttt 292207  T
Q  433 acccaacgtttctaaatagcgatttttatgttaagtttctaagatttgttaattttagtcct 494  Q
     |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  292206 gcccaacgtttctaaatagtgatttttatgttaagtttctaagatttgttaattttagtcct 292145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 101 - 494
Target Start/End: Complemental strand, 29716117 - 29715722
Alignment:
Q  101 aagtggtcggtatgaacttatatccggctacctcaaataataaacattgagctactccaaataagttccgtcacaaaaatttacataaataataaagtnn 200  Q
    |||||||||||||| | || ||| |||||||| ||||||||||| |||||||||| ||||| || || |||  ||||||||  |||| ||||||||        
T  29716117 aagtggtcggtatgtatttttattcggctaccccaaataataaatattgagctaccccaaacaaatttcgttgcaaaaattagcatacataataaa--ta 29716020  T
Q  201 nnnnnttaccacaagactaatagatttatttgt----gtttgatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattatta 296  Q
         |||| ||||||   ||||||||||||||    |||||||||||  |||||||||||||||| |||| || | ||||||||||||||||||||| |    
T  29716019 aaaaattactacaagatggatagatttatttgtatttgtttgatactcttgatctcaataacaacaatagaaaaacttttttcaacaataaaaattatca 29715920  T
Q  297 agacaatatttatagacaaattaaatggacaatgagtttcttgcgaataacctatttatttacatttgaaaaggcattattaatctattattaaacagac 396  Q
    |||||||| | |||||||||||||||||||  |||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||| |    
T  29715919 agacaatagtcatagacaaattaaatggacggtgagtttcttgtaaataacctatttatttacatttgaaaagacattattaatctattattaaacagtc 29715820  T
Q  397 aattattgatgaaattgggttcttgaaacacattttacccaacgtttctaaatagcgatttttatgttaagtttctaagatttgttaattttagtcct 494  Q
     |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29715819 tattattgatgaaattgggttcttgaaacgcattttgcccaacgtttctaaatagcgatttttatgttaagtttctaagatttgttaattttagtcct 29715722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 249 - 450
Target Start/End: Complemental strand, 46211799 - 46211599
Alignment:
Q  249 tctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagtttcttgcgaataacc 348  Q
    |||||||||||||  || | || |||||||||||||||||||| || ||||||||| | |||||||||||||||| |||||||||||||||| |||||||    
T  46211799 tctcaataacaacgataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacc 46211700  T
Q  349 tatttatttacatttgaaaaggcattattaatctattattaaacagacaattattgatgaaattgggttcttgaaacacattttacccaacgtttctaaa 448  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||  |||||  ||||||||||||||    
T  46211699 tatttatttacatttgaaaagacattattaatctattattaaacaaacaattattgatgaaattcggttcttgaaacgtatttt-gccaacgtttctaaa 46211601  T
Q  449 ta 450  Q
    ||    
T  46211600 ta 46211599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 234 - 450
Target Start/End: Complemental strand, 48609242 - 48609027
Alignment:
Q  234 gtttgatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagt 333  Q
    |||||||||| ||  |||||||||||||| || | ||  ||||||||||||||||||| || ||||||||| | |||||||||||||||| |||||||||    
T  48609242 gtttgatacttcccgtctcaataacaacaataaagaaaactttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagt 48609143  T
Q  334 ttcttgcgaataacctatttatttacatttgaaaaggcattattaatctattattaaacagacaattattgatgaaattgggttcttgaaacacatttta 433  Q
    ||||||| ||||||||||||||| |||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||     
T  48609142 ttcttgcaaataacctatttattaacatttgaaaacacattattaatctattattaaacaaacaattattgatgaaattgggttcttgaaacatatttt- 48609044  T
Q  434 cccaacgtttctaaata 450  Q
     |||||||||| |||||    
T  48609043 gccaacgtttcgaaata 48609027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 234 - 424
Target Start/End: Original strand, 758838 - 759028
Alignment:
Q  234 gtttgatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagt 333  Q
    |||||||||| ||  |||||||||||||  || | || |||||||||| ||||||||| || ||||||||| | |||||||||||||||| |||||||||    
T  758838 gtttgatacttcccgtctcaataacaacgataaagaaacctttttcaataataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagt 758937  T
Q  334 ttcttgcgaataacctatttatttacatttgaaaaggcattattaatctattattaaacagacaattattgatgaaattgggttcttgaaa 424  Q
    ||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  758938 ttcttgcaaataatctatttatttacatttgaaaagacattattaatctattattaaacaaacaattattgatgaaattcggttcttgaaa 759028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 235 - 450
Target Start/End: Complemental strand, 83768 - 83553
Alignment:
Q  235 tttgatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatgg-acaatgagt 333  Q
    ||||||||| ||  |||||||||||||  || | || |||||||||||||||||||| || ||||||||| | ||||||||||||||    |||||||||    
T  83768 tttgatacttcccgtctcaataacaacgataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaaacatacaatgagt 83669  T
Q  334 ttcttgcgaataacctatttatttacatttgaaaaggcattattaatctattattaaacagacaattattgatgaaattgggttcttgaaacacatttta 433  Q
    ||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||  |||||     
T  83668 ttcttgtaaataacctatttatttacatttgaaaagacattattaatctattattaaacaaacaattattgatgaaattcggttcttgaaacgtatttt- 83570  T
Q  434 cccaacgtttctaaata 450  Q
     ||||||||||||||||    
T  83569 gccaacgtttctaaata 83553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 234 - 369
Target Start/End: Original strand, 39719888 - 39720023
Alignment:
Q  234 gtttgatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagt 333  Q
    |||||||||| ||  |||||||||||||| || | || | |||||||||||||||||| || ||||||||| | |||||||||||||||| |||||||||    
T  39719888 gtttgatacttcccgtctcaataacaacaataaagaaacatttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagt 39719987  T
Q  334 ttcttgcgaataacctatttatttacatttgaaaag 369  Q
    ||||||| ||||||||||||||||||||||||||||    
T  39719988 ttcttgcaaataacctatttatttacatttgaaaag 39720023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 275 - 424
Target Start/End: Original strand, 34659362 - 34659512
Alignment:
Q  275 ttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagtttcttgcgaataacctatttatttacatttgaaaaggcatt 374  Q
    |||||||||||||||||||| ||||||||| | ||| |||||||||||||| ||||||||| |||| |||||| ||||  ||||||||| ||||  ||||    
T  34659362 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggataatgagtttattgcaaataacttattagtttacatttaaaaatacatt 34659461  T
Q  375 attaatcta-ttattaaacagacaattattgatgaaattgggttcttgaaa 424  Q
    ||||||||| ||| ||||||  ||||||| ||| ||||||| |||||||||    
T  34659462 attaatctatttagtaaacactcaattatagataaaattggtttcttgaaa 34659512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 312 - 452
Target Start/End: Original strand, 13465463 - 13465605
Alignment:
Q  312 acaaattaaatggacaatgagtttcttgcgaataacctattt-atttacatttgaaaaggcattattaatcta-ttattaaacagacaattattgatgaa 409  Q
    |||||||||||||||| |||||||||||| ||||||||||||  |||||||| |||||| ||||||||||||| ||| ||||| | ||||||| ||| ||    
T  13465463 acaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaa 13465562  T
Q  410 attgggttcttgaaacacattttacccaacgtttctaaatagc 452  Q
    ||||| |||||||||  |||||||| |||| ||| ||||||||    
T  13465563 attggtttcttgaaatgcattttacacaacttttttaaatagc 13465605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 312 - 452
Target Start/End: Original strand, 28491320 - 28491462
Alignment:
Q  312 acaaattaaatggacaatgagtttcttgcgaataacctattta-tttacatttgaaaaggcattattaatcta-ttattaaacagacaattattgatgaa 409  Q
    |||||||||||||||| |||||||||||| ||||||||||||| |||||||| |||||| ||||||||||||| ||| ||||| | ||||||| ||| ||    
T  28491320 acaaattaaatggacattgagtttcttgcaaataacctatttattttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaa 28491419  T
Q  410 attgggttcttgaaacacattttacccaacgtttctaaatagc 452  Q
    ||||| |||||||||  |||||||| |||  ||| ||||||||    
T  28491420 attggtttcttgaaatgcattttacacaaattttttaaatagc 28491462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 274 - 385
Target Start/End: Original strand, 37202790 - 37202901
Alignment:
Q  274 tttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagtttcttgcgaataacctatttatttacatttgaaaaggcat 373  Q
    |||||||||| ||||| |||||||||||||| | ||| |||||||||||||||| | |||||||||| ||||| |||||| |||||||  |||||  |||    
T  37202790 tttttcaacattaaaagttattaagacaatagtcataaacaaattaaatggacattcagtttcttgcaaataatctatttgtttacatcagaaaaaacat 37202889  T
Q  374 tattaatctatt 385  Q
    ||||||||||||    
T  37202890 tattaatctatt 37202901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 372 - 452
Target Start/End: Original strand, 25592197 - 25592278
Alignment:
Q  372 attattaatctattat-taaacagacaattattgatgaaattgggttcttgaaacacattttacccaacgtttctaaatagc 452  Q
    |||||||||||||| | |||| || || |||| ||| |||||||||||||||||||||||||| ||||| ||| ||||||||    
T  25592197 attattaatctattttgtaaatagtcatttatggataaaattgggttcttgaaacacattttatccaacttttttaaatagc 25592278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 25591964 - 25592013
Alignment:
Q  119 tatatccggctacctcaaataataaacattgagctactccaaataagttc 168  Q
    ||||||| |||||| ||||||||||| |||||||||||||||| ||||||    
T  25591964 tatatccagctaccccaaataataaatattgagctactccaaacaagttc 25592013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 312 - 385
Target Start/End: Complemental strand, 25439653 - 25439582
Alignment:
Q  312 acaaattaaatggacaatgagtttcttgcgaataacctattt-atttacatttgaaaaggcattattaatctatt 385  Q
    |||||||||||||||| ||||||||||||    |||||||||  |||||||| |||||| |||||||||||||||    
T  25439653 acaaattaaatggacattgagtttcttgc---aaacctatttgttttacattggaaaagacattattaatctatt 25439582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 168
Target Start/End: Original strand, 34658913 - 34658977
Alignment:
Q  104 tggtcggtatgaacttatatccggctacctcaaataataaacattgagctactccaaataagttc 168  Q
    ||||||||||| | |||||| | ||||||  |||||||| |||||||||||||||||| ||||||    
T  34658913 tggtcggtatgtatttatattccgctaccctaaataatatacattgagctactccaaacaagttc 34658977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 45855377 - 45855447
Alignment:
Q  97 cttgaagtggtcggtatgaacttatatccggctacctcaaataataaacattgagctactccaaataagtt 167  Q
    |||||| ||||||||||  | ||||||   |||||| ||||||||||| |||||||||| |||||||||||    
T  45855377 cttgaattggtcggtatatatttatatttagctaccccaaataataaatattgagctaccccaaataagtt 45855447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 101 - 494
Target Start/End: Original strand, 43115014 - 43115410
Alignment:
Q  101 aagtggtcggtatgaacttatatccggctacctcaaataataaacattgagctactccaaataagttccgtcacaaaaatttacataaataataaagtnn 200  Q
    |||||||||||||| | || ||||||| |||  ||||||||||| ||||||||||  |||| || ||||||   |||||||  |||||||||||||||      
T  43115014 aagtggtcggtatgtatttttatccggatactccaaataataaatattgagctacctcaaacaaattccgttgtaaaaattagcataaataataaagtaa 43115113  T
Q  201 nnnnnttaccacaagactaatagatttatttgt----gtttgatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattatta 296  Q
         |||| |||||| | ||||||||||||||    ||||||||||||||||||||||||||||| |||| || | ||||||||||||||||||||| |    
T  43115114 aaaaattactacaagattgatagatttatttgtatttgtttgatactcccgatctcaataacaacaatagagaa-cttttttcaacaataaaaattatca 43115212  T
Q  297 agacaatatttatagacaaattaaatggacaatgagtttcttgcgaataacctatttatttacatttgaaaaggcattattaatctattattaaacagac 396  Q
    |||||||| | || || ||| |||||||||| |||||||||||| |||||| ||||||||||||||||||||  |||||||||||||||||||||||| |    
T  43115213 agacaatagtcattgaaaaactaaatggacagtgagtttcttgcaaataacatatttatttacatttgaaaaaacattattaatctattattaaacagtc 43115312  T
Q  397 aattattgatgaaattgggttcttgaaacacattttacccaacgtttctaaatagcgatttttatgttaagtttctaagatttgttaattttagtcct 494  Q
    ||||||||||||||||||||||||||||| |||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43115313 aattattgatgaaattgggttcttgaaacgcatttcgcccgacgtttctaaatagcgatttttatgttaagtttctaagatttgttaattttagtcct 43115410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 233 - 494
Target Start/End: Complemental strand, 38699902 - 38699641
Alignment:
Q  233 tgtttgatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgag 332  Q
    |||||||||||| |||||||||||||||||||||| || | ||||||||||||||||||||| ||||||||| | || ||||||||||||||| | ||||    
T  38699902 tgtttgatactctcgatctcaataacaacagtagagaaacatttttcaacaataaaaattatcaagacaatagtcatggacaaattaaatggagagtgag 38699803  T
Q  333 tttcttgcgaataacctatttatttacatttgaaaaggcattattaatctattattaaacagacaattattgatgaaattgggttcttgaaacacatttt 432  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||    
T  38699802 tttcttgcaaataacctatttatttacatttgaaaagacattattaatctattattaaacagtctattattgatgaaattgggttcttgaaacgcatttt 38699703  T
Q  433 acccaacgtttctaaatagcgatttttatgttaagtttctaagatttgttaattttagtcct 494  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38699702 gcccaacgtttctaaatagcgatttttatgttaagtttctaagatttgttaattttagtcct 38699641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 234 - 494
Target Start/End: Complemental strand, 13541571 - 13541312
Alignment:
Q  234 gtttgatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagt 333  Q
    ||||||||||  || ||| |||||||||| |||| ||  |||||||||||||||||||||| ||||||||| | ||||| ||||||||||||||||||||    
T  13541571 gtttgatactttcggtcttaataacaacaatagagaaatctttttcaacaataaaaattatcaagacaatagtcatagataaattaaatggacaatgagt 13541472  T
Q  334 ttcttgcgaataacctatttatttacatttgaaaaggcattattaatctattattaaacagacaattattgatgaaattgggttcttgaaacacatttta 433  Q
    ||||||| ||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||| ||||||||||| ||||| ||||| ||||||     
T  13541471 ttcttgcaaataacctatttatttacatttgaaaagatattattaatctatt-ttaaacagacaattagtgatgaaattgagttctcgaaacgcattttg 13541373  T
Q  434 cccaacgtttctaaatagcgatttttatgttaagtttctaagatttgttaattttagtcct 494  Q
    |||||||||| ||||| | ||||||||||||||||| ||||||||||||||||||||||||    
T  13541372 cccaacgtttttaaatggtgatttttatgttaagttcctaagatttgttaattttagtcct 13541312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 234 - 494
Target Start/End: Original strand, 13682902 - 13683161
Alignment:
Q  234 gtttgatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagt 333  Q
    ||||||||||  || ||| |||||||||| |||| ||  |||||||||||||||||||||| ||||||||| | ||||| ||||||||||||||||||||    
T  13682902 gtttgatactttcggtcttaataacaacaatagagaaatctttttcaacaataaaaattatcaagacaatagtcatagataaattaaatggacaatgagt 13683001  T
Q  334 ttcttgcgaataacctatttatttacatttgaaaaggcattattaatctattattaaacagacaattattgatgaaattgggttcttgaaacacatttta 433  Q
    ||||||| ||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||| ||||||||||| ||||| ||||| ||||||     
T  13683002 ttcttgcaaataacctatttatttacatttgaaaagatattattaatctatt-ttaaacagacaattagtgatgaaattgagttctcgaaacgcattttg 13683100  T
Q  434 cccaacgtttctaaatagcgatttttatgttaagtttctaagatttgttaattttagtcct 494  Q
    |||||||||| ||||| | ||||||||||||||||| ||||||||||||||||||||||||    
T  13683101 cccaacgtttttaaatggtgatttttatgttaagttcctaagatttgttaattttagtcct 13683161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 234 - 369
Target Start/End: Complemental strand, 21441730 - 21441595
Alignment:
Q  234 gtttgatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagt 333  Q
    |||||||||| ||  |||||||||||||| || | || |||||||||||||||||||| || || |||||| | |||||||||||||||| |||||||||    
T  21441730 gtttgatacttcccgtctcaataacaacaataaagaaacctttttcaacaataaaaatgatcaaaacaatagtcatagacaaattaaatgtacaatgagt 21441631  T
Q  334 ttcttgcgaataacctatttatttacatttgaaaag 369  Q
    ||||||| ||||||||||||||||||||||||||||    
T  21441630 ttcttgcaaataacctatttatttacatttgaaaag 21441595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 249 - 369
Target Start/End: Complemental strand, 4072349 - 4072229
Alignment:
Q  249 tctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagtttcttgcgaataacc 348  Q
    |||||||||||||| || | ||  ||||||||||||||||||| || ||||||||| | |||||||||||||||| |||||||||||||||| |||||||    
T  4072349 tctcaataacaacaataaagaaaactttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacc 4072250  T
Q  349 tatttatttacatttgaaaag 369  Q
    |||||||||||||||||||||    
T  4072249 tatttatttacatttgaaaag 4072229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 234 - 369
Target Start/End: Complemental strand, 41323318 - 41323183
Alignment:
Q  234 gtttgatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagt 333  Q
    |||||||||| ||  |||||||||||||| || | || | |||||||||||||||||| || ||||||||| | |||||||||||||||| |||||||||    
T  41323318 gtttgatacttcccgtctcaataacaacaataaagaaacatttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagt 41323219  T
Q  334 ttcttgcgaataacctatttatttacatttgaaaag 369  Q
    ||||||| ||||| ||||||||||||||||||||||    
T  41323218 ttcttgcaaataaactatttatttacatttgaaaag 41323183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 273 - 384
Target Start/End: Complemental strand, 38172904 - 38172793
Alignment:
Q  273 ctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagtttcttgcgaataacctatttatttacatttgaaaaggca 372  Q
    |||| ||||||||||||||||| ||||||||| | ||| |||||||||||| ||||||||||| |||| |||||||||||  |||||||| || ||  ||    
T  38172904 ctttgtcaacaataaaaattatcaagacaatagtcataaacaaattaaatgaacaatgagtttattgcaaataacctattagtttacattggagaataca 38172805  T
Q  373 ttattaatctat 384  Q
    ||||||||||||    
T  38172804 ttattaatctat 38172793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 312 - 452
Target Start/End: Original strand, 12491571 - 12491713
Alignment:
Q  312 acaaattaaatggacaatgagtttcttgcgaataacctattt-atttacatttgaaaaggcattattaatcta-ttattaaacagacaattattgatgaa 409  Q
    |||||||||||||||| |||||||||||| ||||||||||||  |||||||| |||||  ||||||||||||| ||| ||||| | ||||||| |||  |    
T  12491571 acaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaaaacattattaatctatttagtaaacggtcaattatggataca 12491670  T
Q  410 attgggttcttgaaacacattttacccaacgtttctaaatagc 452  Q
    ||||| |||||||||  |||||||| |||| ||| ||||||||    
T  12491671 attggtttcttgaaatgcattttacacaacttttttaaatagc 12491713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 299 - 424
Target Start/End: Original strand, 18881850 - 18881976
Alignment:
Q  299 acaatatttatagacaaattaaatggacaatgagtttcttgcgaataacctatttatttacatttgaaaaggcattattaatctattat-taaacagaca 397  Q
    |||||| | ||| ||| ||||||||| ||||||||||||||| |||||||||||| |||||||| |||||  ||||||||||||||| | ||||||  ||    
T  18881850 acaatagtcataaacatattaaatgggcaatgagtttcttgcaaataacctatttgtttacattggaaaaaacattattaatctattttgtaaacaatca 18881949  T
Q  398 attattgatgaaattgggttcttgaaa 424  Q
    ||||| ||| ||||||  |||||||||    
T  18881950 attatggataaaattgccttcttgaaa 18881976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 273 - 383
Target Start/End: Original strand, 40118110 - 40118219
Alignment:
Q  273 ctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagtttcttgcgaataacctatttatttacatttgaaaaggca 372  Q
    |||||||||||||||||||||| |||| |||| | ||| |||||||||||||||||||| ||| |||| ||||| |||||  |||||| |||||||   |    
T  40118110 ctttttcaacaataaaaattatcaagataatagtcataaacaaattaaatggacaatgaatttattgcaaataatctattagtttaca-ttgaaaatata 40118208  T
Q  373 ttattaatcta 383  Q
    |||||||||||    
T  40118209 ttattaatcta 40118219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 315 - 368
Target Start/End: Original strand, 33613707 - 33613760
Alignment:
Q  315 aattaaatggacaatgagtttcttgcgaataacctatttatttacatttgaaaa 368  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  33613707 aattaaatggacaatgagtttcttgcaaataacctatttatttatatttgaaaa 33613760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 273 - 452
Target Start/End: Original strand, 41570407 - 41570587
Alignment:
Q  273 ctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagtttcttgcgaataacctatttatttacatttgaaaaggca 372  Q
    ||||||||||||||| |||||| |||  |||| | ||| ||| ||||||||   |||||||||||||| |||||||||||| |||||  || ||||  ||    
T  41570407 ctttttcaacaataacaattatcaagtaaatagtcataaacatattaaatgagtaatgagtttcttgcaaataacctatttgtttac-cttaaaaaaaca 41570505  T
Q  373 ttattaatctattat-taaacagacaattattgat-gaaattgggttcttgaaacacattttacccaacgtttctaaatagc 452  Q
      ||||||||||| | ||||||  ||||||| |||  ||||||| |||||||||| |||||   ||||| ||||||||||||    
T  41570506 acattaatctattttgtaaacaatcaattatggataaaaattggcttcttgaaacgcatttagtccaacttttctaaatagc 41570587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 164
Target Start/End: Original strand, 32415697 - 32415771
Alignment:
Q  90 tattatacttgaagtggtcggtatgaacttatatccggctacctcaaataataaacattgagctactccaaataa 164  Q
    |||||| ||| || |||| ||||| |||||||||| ||| |||| ||||||||||||||||| ||| ||||||||    
T  32415697 tattattcttcaattggttggtataaacttatatctggcaaccttaaataataaacattgagttaccccaaataa 32415771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 43114947 - 43114990
Alignment:
Q  38 caggggcgtagctcttcacatgggaggggtagtcttggctaccc 81  Q
    |||||||||||| ||||| ||||||||||||| |||||||||||    
T  43114947 caggggcgtagcccttcatatgggaggggtagccttggctaccc 43114990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 13541695 - 13541645
Alignment:
Q  90 tattatacttgaagtggtcggtatgaacttatatccggctacctcaaataa 140  Q
    |||||| ||| |||||||||||||| |||| |||||||||||| |||||||    
T  13541695 tattattcttaaagtggtcggtatgtacttgtatccggctaccccaaataa 13541645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 13682778 - 13682828
Alignment:
Q  90 tattatacttgaagtggtcggtatgaacttatatccggctacctcaaataa 140  Q
    |||||| ||| |||||||||||||| |||| |||||||||||| |||||||    
T  13682778 tattattcttaaagtggtcggtatgtacttgtatccggctaccccaaataa 13682828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 104 - 168
Target Start/End: Original strand, 41570233 - 41570297
Alignment:
Q  104 tggtcggtatgaacttatatccggctacctcaaataataaacattgagctactccaaataagttc 168  Q
    |||| |||||| | |||||| | |||||| ||||||||||| |||||||||| ||||| ||||||    
T  41570233 tggtaggtatgtatttatattcagctaccccaaataataaatattgagctaccccaaaaaagttc 41570297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 188; Significance: 1e-101; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 38 - 494
Target Start/End: Original strand, 16152039 - 16152499
Alignment:
Q  38 caggggcgtagctcttcacatgggaggggtagtcttggctacccnnnnnnnn-tattatacttgaagtggtcggtatgaacttatatccggctacctcaa 136  Q
    |||||||||||| ||||| ||||||||||||| |||||||||||         |||||| |||||| |  |||||||  | ||||||||||||||| |||    
T  16152039 caggggcgtagcccttcatatgggaggggtagccttggctaccccaaaaaaagtattattcttgaattaatcggtatatatttatatccggctaccccaa 16152138  T
Q  137 ataataaacattgagctactccaaataagttccgtcacaaaaatttacataaataataaagtnnnnnnnttaccacaagactaatagatttatttgt--- 233  Q
    ||||||||||||||||||| |||||||||||  ||  ||||||||  |||||||||||||||       | || |||||| | ||||||||||||||       
T  16152139 ataataaacattgagctaccccaaataagtttagttgcaaaaattagcataaataataaagtaaaaaact-actacaagattgatagatttatttgtatt 16152237  T
Q  234 -gtttgatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgag 332  Q
     |||||||| |  || |||||||||||||| || | || ||||||||||||| ||||||||| ||||||||| |  |||||||||||||  |||||||||    
T  16152238 ggtttgatattttcggtctcaataacaacaataaagaaacctttttcaacaacaaaaattatcaagacaatagtcgtagacaaattaaacagacaatgag 16152337  T
Q  333 tttcttgcgaataacctatttatttacatttgaaaaggcattattaatctattattaaacagacaattattgatgaaattgggttcttgaaacacatttt 432  Q
    |||||||| |||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||    
T  16152338 tttcttgcaaataacatatttatttacatttaaaaagtcattattaatctattattaaacagacaattattgatgaaattgggttcttcaaatgcatttt 16152437  T
Q  433 acccaacgtttctaaatagcgatttttatgttaagtttctaagatttgttaattttagtcct 494  Q
     ||||| ||||  ||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  16152438 gcccaatgttttaaaatagcgaattttatgttaagtttttaagatttgttaattttagtcct 16152499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 234 - 450
Target Start/End: Complemental strand, 17653124 - 17652909
Alignment:
Q  234 gtttgatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagt 333  Q
    |||||||||| || ||||||||||||||| || |  |  ||||||||||||||||||| || ||||||||| | |||||||||||||||| |||||||||    
T  17653124 gtttgatacttcccatctcaataacaacaataaagtaaactttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagt 17653025  T
Q  334 ttcttgcgaataacctatttatttacatttgaaaaggcattattaatctattattaaacagacaattattgatgaaattgggttcttgaaacacatttta 433  Q
    ||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||     
T  17653024 ttcttgcaaataacctatttattaacatttgaaaagacattattaatctattattaaacaaacaattattgatgaaattgggttcttgaaacatatttt- 17652926  T
Q  434 cccaacgtttctaaata 450  Q
     |||||||||| |||||    
T  17652925 gccaacgtttcgaaata 17652909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 249 - 369
Target Start/End: Original strand, 46823828 - 46823948
Alignment:
Q  249 tctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagtttcttgcgaataacc 348  Q
    |||||||||||||| || | || |||||||||||||||||||| || ||||||||| | |||||||||||||||| |||||||||||||||| |||||||    
T  46823828 tctcaataacaacaataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacc 46823927  T
Q  349 tatttatttacatttgaaaag 369  Q
    |||||||||||||||||||||    
T  46823928 tatttatttacatttgaaaag 46823948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 234 - 369
Target Start/End: Original strand, 21295941 - 21296076
Alignment:
Q  234 gtttgatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagt 333  Q
    |||||||||| ||  ||||| |||||||| || | || |||||||||||||||||||| || ||||||||| | |||||||||||||||| |||||||||    
T  21295941 gtttgatacttcccgtctcagtaacaacaataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagt 21296040  T
Q  334 ttcttgcgaataacctatttatttacatttgaaaag 369  Q
    ||||||| ||||||||||||||||||||||||||||    
T  21296041 ttcttgcaaataacctatttatttacatttgaaaag 21296076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 371 - 479
Target Start/End: Complemental strand, 11027909 - 11027801
Alignment:
Q  371 cattattaatctattattaaacagacaattattgatgaaattgggttcttgaaacacattttacccaacgtttctaaatagcgatttttatgttaagttt 470  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||   ||||| |||||||||| |||||| | ||||||||||||||||     
T  11027909 cattattaatctattattaaacagacaattattgatgaaattgagttcttcaaatgtattttgcccaacgtttttaaataacaatttttatgttaagttc 11027810  T
Q  471 ctaagattt 479  Q
     ||||||||    
T  11027809 ttaagattt 11027801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 386 - 494
Target Start/End: Original strand, 8554780 - 8554885
Alignment:
Q  386 attaaacagacaattattgatgaaattgggttcttgaaacacattttacccaacgtttctaaatagcgatttttatgttaagtttctaagatttgttaat 485  Q
    ||||||||||||||||| |||||||||||||||   |||| ||||||  | |||||||||||||||||| ||||||||||||||  ||||||||||||||    
T  8554780 attaaacagacaattatggatgaaattgggttc---aaacgcattttttcaaacgtttctaaatagcgaattttatgttaagttcttaagatttgttaat 8554876  T
Q  486 tttagtcct 494  Q
    |||||||||    
T  8554877 tttagtcct 8554885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 312 - 452
Target Start/End: Original strand, 40763818 - 40763960
Alignment:
Q  312 acaaattaaatggacaatgagtttcttgcgaataacctattt-atttacatttgaaaaggcattattaatcta-ttattaaacagacaattattgatgaa 409  Q
    |||||||||||||||| |||||||||||| ||||||||||||  |||||||| |||||  ||||||||||||| ||| ||||| | ||||||| ||| ||    
T  40763818 acaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaaaacattattaatctatttagtaaacggtcaattatggataaa 40763917  T
Q  410 attgggttcttgaaacacattttacccaacgtttctaaatagc 452  Q
    ||||| |||||||||  |||||||| |||| ||| ||||||||    
T  40763918 attggtttcttgaaatgcattttacacaacttttttaaatagc 40763960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 312 - 452
Target Start/End: Complemental strand, 20843279 - 20843138
Alignment:
Q  312 acaaattaaatggacaatgagtttcttgcgaataacctatttatttacatttgaaaaggcattattaatcta-ttattaaacagacaattattgatgaaa 410  Q
    |||| ||||||||||| ||| |||||||| |||||||||||| |||||||| |||||| ||||||||||||| ||| ||||  | | ||||| ||| |||    
T  20843279 acaatttaaatggacattgaatttcttgcaaataacctatttgtttacattggaaaagacattattaatctatttagtaaatggtctattatggataaaa 20843180  T
Q  411 ttgggttcttgaaacacattttacccaacgtttctaaatagc 452  Q
    |||| |||||||||  ||||||||||||| ||| ||||||||    
T  20843179 ttggcttcttgaaatgcattttacccaacttttttaaatagc 20843138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 428 - 494
Target Start/End: Complemental strand, 8832950 - 8832884
Alignment:
Q  428 attttacccaacgtttctaaatagcgatttttatgttaagtttctaagatttgttaattttagtcct 494  Q
    ||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  8832950 attttgcccaacgtttctaaatagcgattttattgttaagtttctaagatttgttaattttagtcct 8832884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 312 - 451
Target Start/End: Complemental strand, 3458168 - 3458028
Alignment:
Q  312 acaaattaaatggacaatgagtttcttgcgaataacctatttatttacatttgaaaaggcattattaatctat-tattaaacagacaattattgatgaaa 410  Q
    |||||||||||||| | |||||||||||| |||||| ||||| |||||| | || ||| |||||||||| ||| || ||||| | ||||||| ||| |||    
T  3458168 acaaattaaatggatattgagtttcttgcaaataacttatttgtttacactggagaagacattattaatttatctagtaaacggtcaattatagataaaa 3458069  T
Q  411 ttgggttcttgaaacacattttacccaacgtttctaaatag 451  Q
    |||| |||||||||   |||||||||||| ||| |||||||    
T  3458068 ttggtttcttgaaatttattttacccaacctttttaaatag 3458028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 211 - 340
Target Start/End: Complemental strand, 11028047 - 11027914
Alignment:
Q  211 acaagactaatagatttatttgt----gtttgatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatt 306  Q
    |||||| | ||||||||||||||    |||||||||| ||  |||||||||||||| || | || |||||||||| || ||||||| | ||||||||| |    
T  11028047 acaagattgatagatttatttgtattggtttgatacttccagtctcaataacaacaataaagaaacctttttcaaaaacaaaaattctcaagacaatagt 11027948  T
Q  307 tatagacaaattaaatggacaatgagtttcttgc 340  Q
     || ||||||||||||| ||||||||||||||||    
T  11027947 catggacaaattaaatgtacaatgagtttcttgc 11027914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 38 - 161
Target Start/End: Complemental strand, 11034101 - 11033977
Alignment:
Q  38 caggggcgtagctcttcacatgggaggggtagtcttggctacccnnnnnnnn-tattatacttgaagtggtcggtatgaacttatatccggctacctcaa 136  Q
    |||||||||||| ||||| ||||||||||||| |||||||| ||         ||||||  |||| |||||||||||| | |||||||||| ||||||||    
T  11034101 caggggcgtagcccttcatatgggaggggtagccttggctatccgaaaaaaaatattatttttgatgtggtcggtatgtatttatatccggttacctcaa 11034002  T
Q  137 ataataaacattgagctactccaaa 161  Q
    ||||||||||||||||||| |||||    
T  11034001 ataataaacattgagctaccccaaa 11033977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 343 - 452
Target Start/End: Complemental strand, 52403338 - 52403228
Alignment:
Q  343 ataacctatttatttacatttgaaaaggcattattaatctattat-taaacagacaattattgatgaaattgggttcttgaaacacattttacccaacgt 441  Q
    |||| |||||| | |||||| |||||   |||||||||||||| | |||| || || |||| ||| |||||||||||||||||||||||||| ||||| |    
T  52403338 ataatctatttgtgtacattggaaaatatattattaatctattttgtaaatagtcatttatggataaaattgggttcttgaaacacattttatccaactt 52403239  T
Q  442 ttctaaatagc 452  Q
    || ||||||||    
T  52403238 ttttaaatagc 52403228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 35061885 - 35061925
Alignment:
Q  127 gctacctcaaataataaacattgagctactccaaataagtt 167  Q
    |||||||||||||||||| |||||||||||| |||||||||    
T  35061885 gctacctcaaataataaatattgagctactctaaataagtt 35061925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 20843365 - 20843308
Alignment:
Q  104 tggtcggtatgaacttatatccggctacctcaaataataaacattgagctactccaaa 161  Q
    |||| ||||| || |||| | |||||||| |||||||||||||||||||||| |||||    
T  20843365 tggttggtataaatttattttcggctaccccaaataataaacattgagctaccccaaa 20843308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 299 - 413
Target Start/End: Complemental strand, 35106593 - 35106481
Alignment:
Q  299 acaatatttatagacaaattaaatggacaatgagtttcttgcgaataacctatttatttacatttgaaaaggcattattaatctatt-attaaacagaca 397  Q
    |||||| ||||| |||||||||| ||||||| ||||| |||  ||| |||| ||| ||||||||  ||||  ||||| ||||||||| ||||||||| ||    
T  35106593 acaatagttataaacaaattaaaaggacaataagttt-ttgaaaattacctgtttctttacattgaaaaa--cattaataatctatttattaaacagtca 35106497  T
Q  398 attattgatgaaattg 413  Q
    ||||| ||| ||||||    
T  35106496 attatggataaaattg 35106481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 173; Significance: 1e-92; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 90 - 488
Target Start/End: Original strand, 4435053 - 4435455
Alignment:
Q  90 tattatacttgaagtggtcggtatgaacttatatccggctacctcaaataataaacattgagctactccaaataagttccgtcacaaaaatttacataaa 189  Q
    |||||| |||||| ||||||||||| | |||||||||| ||||| |||||||||||||||| |||| | ||||||||||  |  ||||| ||  ||||||    
T  4435053 tattattcttgaattggtcggtatgtatttatatccggttaccttaaataataaacattgaactaccctaaataagttcaattgcaaaagttatcataaa 4435152  T
Q  190 taataaagtnnnnnnnttaccacaagactaatagatttatttgt----gtttgatactcccgatctcaataacaacagtagataagcctttttcaacaat 285  Q
    |||||||||       | ||  || || | ||||||||||||||    |||||||||| ||| ||||||||||||   |||| || ||||||| ||||||    
T  4435153 taataaagtaaaacaatcactgcatgattgatagatttatttgtatttgtttgatacttccggtctcaataacaattatagagaaaccttttttaacaat 4435252  T
Q  286 aaaaattattaagacaatatttatagacaaattaaatggacaatgagtttcttgcgaataacctatttatttacatttgaaaaggcattattaatctatt 385  Q
    |||||||||  |||||||| | ||||| || || ||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||    
T  4435253 aaaaattatctagacaatagtcatagataattttaatggacaatgagtttcttgtaaataacctatttatttacatttgaaaagacattattaatctatt 4435352  T
Q  386 attaaacagacaattattgatgaaattgggttcttgaaacacattttacccaacgtttctaaatagcgatttttatgttaagtttctaagatttgttaat 485  Q
    ||||||||||||||||| |||||||||| ||||||||||  |||||| |||||||||||||||||  ||||||||||||||||| |||||||||||||||    
T  4435353 attaaacagacaattatggatgaaattgagttcttgaaatgcattttgcccaacgtttctaaataatgatttttatgttaagttactaagatttgttaat 4435452  T
Q  486 ttt 488  Q
    |||    
T  4435453 ttt 4435455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 276 - 494
Target Start/End: Original strand, 38881702 - 38881919
Alignment:
Q  276 tttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagtttctt----gcgaataacctatttatttacatttgaaaaggc 371  Q
    ||||||||||||||||||| |||| |||| | ||||| |||||||||| ||||||||||| ||    || |||||| |||||||||||||||||     |    
T  38881702 tttcaacaataaaaattatcaagataatagtcatagataaattaaatgtacaatgagttttttttttgcaaataacgtatttatttacatttga-----c 38881796  T
Q  372 attattaatctattattaaacagacaattattgatgaaattgggttcttgaaacacattttacccaacgtttctaaatagcgatttttatgttaagtttc 471  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||   |||||  ||||||||| | ||||| ||||||||||||||||| |    
T  38881797 attattaatctattattaaacagacaattatagatgaaattgggttcttgaaatgtattttgtccaacgtttttcaatagtgatttttatgttaagttcc 38881896  T
Q  472 taagatttgttaattttagtcct 494  Q
    ||   ||||||||||||||||||    
T  38881897 tatcttttgttaattttagtcct 38881919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 285 - 452
Target Start/End: Complemental strand, 42799275 - 42799106
Alignment:
Q  285 taaaaattattaagacaatatttatagacaaattaaatggacaatgagtttcttgcgaataacctatttatttacatttgaaaaggcattattaatcta- 383  Q
    |||||||| | ||||||||| | ||| |||||||||||||||| |||||||||||| ||||| |||||| |||||||| |||||| |||||||||||||     
T  42799275 taaaaattttaaagacaatagtcataaacaaattaaatggacattgagtttcttgcaaataaactatttgtttacattggaaaagacattattaatctat 42799176  T
Q  384 ttattaaacaga-caattattgatgaaattgggttcttgaaacacattttacccaacgtttctaaatagc 452  Q
    ||| ||||  || ||||||| ||| ||||||| |||||||||  ||||||| ||||| ||| ||||||||    
T  42799175 ttagtaaaatgatcaattatggataaaattggcttcttgaaatgcattttatccaacttttttaaatagc 42799106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 312 - 452
Target Start/End: Original strand, 16546359 - 16546501
Alignment:
Q  312 acaaattaaatggacaatgagtttcttgcgaataacctattt-atttacatttgaaaaggcattattaatcta-ttattaaacagacaattattgatgaa 409  Q
    |||||||||||||||| |||||||||| | ||||||||||||  |||||||| |||||| ||||||||||||| ||| ||||| | ||||||| ||| ||    
T  16546359 acaaattaaatggacattgagtttcttccaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaa 16546458  T
Q  410 attgggttcttgaaacacattttacccaacgtttctaaatagc 452  Q
    ||||| |||||||||  |||||||| |||| ||| ||||||||    
T  16546459 attggtttcttgaaatgcattttacacaacttttttaaatagc 16546501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 314 - 439
Target Start/End: Complemental strand, 39070285 - 39070158
Alignment:
Q  314 aaattaaatggacaatgagtttcttgcgaataacctattt-atttacatttgaaaaggcattattaatcta-ttattaaacagacaattattgatgaaat 411  Q
    |||||||||||||| |||||||||||| ||||||||||||  |||||||| |||||| ||||||||||||| ||| ||||| | ||||||| ||| ||||    
T  39070285 aaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaat 39070186  T
Q  412 tgggttcttgaaacacattttacccaac 439  Q
    ||| |||||||||  |||||||| ||||    
T  39070185 tggtttcttgaaatgcattttacacaac 39070158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 319 - 452
Target Start/End: Complemental strand, 45656031 - 45655897
Alignment:
Q  319 aaatggacaatgagtttcttgcgaataacctatttatttacatttgaaaaggcattattaatcta-ttattaaacagacaattattgatgaaattgggtt 417  Q
    ||||||||| ||| |||||||| |||||||||||| ||||||||  ||||| ||||||||||||| ||| ||||| | |||||||  || ||||||| ||    
T  45656031 aaatggacattgaatttcttgcaaataacctatttgtttacattgaaaaagacattattaatctatttagtaaacggtcaattatgaataaaattggctt 45655932  T
Q  418 cttgaaacacattttacccaacgtttctaaatagc 452  Q
     ||||||  ||||||||||||| ||| ||||||||    
T  45655931 tttgaaatgcattttacccaacttttttaaatagc 45655897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 312 - 439
Target Start/End: Original strand, 37614596 - 37614727
Alignment:
Q  312 acaaattaaatggacaatgagtttcttgcgaataacctatttatt---tacatttgaaaaggcattattaatcta-ttattaaacagacaattattgatg 407  Q
    ||||||||||| |||| ||| |||||||| |||||||||||| ||   |||||| |||||| ||||||||||||| ||| ||||| |  ||||||  ||     
T  37614596 acaaattaaatagacattgaatttcttgcaaataacctatttgtttactacattggaaaagacattattaatctatttagtaaacggctaattatgaata 37614695  T
Q  408 aaattgggttcttgaaacacattttacccaac 439  Q
    || |||| |||||||||  |||||||||||||    
T  37614696 aatttggcttcttgaaatgcattttacccaac 37614727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 153
Target Start/End: Complemental strand, 39070390 - 39070355
Alignment:
Q  118 ttatatccggctacctcaaataataaacattgagct 153  Q
    |||||| |||||||||||||||||||||||||||||    
T  39070390 ttatattcggctacctcaaataataaacattgagct 39070355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 451
Target Start/End: Complemental strand, 14802774 - 14802670
Alignment:
Q  349 tatttatttacatttgaaaaggcattattaatctattat--taaacagacaattattgatgaaattgggttcttgaaacacattttacccaacgtttcta 446  Q
    ||||| |||||||| |||||  ||||||||||||||| |  ||||||  |||||||  || ||||||| |||||||||| | ||||  ||||| ||||||    
T  14802774 tatttgtttacattagaaaaaacattattaatctatttttgtaaacaatcaattataaataaaattggcttcttgaaacgcgttttgtccaacttttcta 14802675  T
Q  447 aatag 451  Q
    |||||    
T  14802674 aatag 14802670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 16546287 - 16546324
Alignment:
Q  118 ttatatccggctacctcaaataataaacattgagctac 155  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  16546287 ttatattcggctaccccaaataataaacattgagctac 16546324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 2e-85; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 274 - 494
Target Start/End: Complemental strand, 17696007 - 17695787
Alignment:
Q  274 tttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagtttcttgcgaataacctatttatttacatttgaaaaggcat 373  Q
    ||||||||||||||||||||| ||||||||| | || |||||| |||||||||| |||||||||||| |||||| ||||||||||||||||||||  |||    
T  17696007 tttttcaacaataaaaattatcaagacaatagtcattgacaaactaaatggacagtgagtttcttgcaaataacttatttatttacatttgaaaaaacat 17695908  T
Q  374 tattaatctattattaaacagacaattattgatgaaattgggttcttgaaacacattttacccaacgtttctaaatagcgatttttatgttaagtttcta 473  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||  ||| ||||||||||||||||||||||||||||||||||||    
T  17695907 tattaatctattattaaacagtcaattattgatgaaattgggttcttgaaacgcatttcgcccgacgtttctaaatagcgatttttatgttaagtttcta 17695808  T
Q  474 agatttgttaattttagtcct 494  Q
    |||||||||||||||||||||    
T  17695807 agatttgttaattttagtcct 17695787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 129 - 494
Target Start/End: Complemental strand, 41640315 - 41639950
Alignment:
Q  129 tacctcaaataataaacattgagctactccaaataagttccgtcacaaaaatttacataaataataaagtnnnnnnn-ttaccacaagactaatagattt 227  Q
    ||||||||||||||||||||||| ||| | |||||||||  ||  ||||| ||  |||||||||||||||        |||| |||||| | ||||||||    
T  41640315 tacctcaaataataaacattgagttaccctaaataagtttagttgcaaaagttagcataaataataaagtaaaaaaaattactacaagattgatagattt 41640216  T
Q  228 atttgt----gtttgatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatg 323  Q
    ||||||    |||||||||| ||  |||||||||||||| || | || |||||||||||||||||||| || |||| |||| | ||||||||||||||||    
T  41640215 atttgtattggtttgatacttcccgtctcaataacaacaataaagaaacctttttcaacaataaaaatgatcaagaaaatagtcatagacaaattaaatg 41640116  T
Q  324 gacaatgagtttcttgcgaataacctatttatttacatttgaaaaggcattattaatctattattaaacagacaattattgatgaaattgggttcttgaa 423  Q
     |||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||| |||||||||    
T  41640115 tacaatgagtttcttgcaaataacatatttatttacatttgaaaagacattattaatctattattaaacaagcaattattgatgaaattgagttcttgaa 41640016  T
Q  424 acacattttacccaacgtttctaaatagcgatttttatgttaagtttctaagatttgttaattttagtcct 494  Q
    ||  |||||  ||||||||||||||||||||||||||||||      |||| |||||||||||||||||||    
T  41640015 acgtattttgtccaacgtttctaaatagcgatttttatgttc-----ctaaaatttgttaattttagtcct 41639950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 272 - 491
Target Start/End: Original strand, 34034070 - 34034289
Alignment:
Q  272 cctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagtttcttgcgaataacctatttatttacatttgaaaaggc 371  Q
    ||||||||||||||||||||||| |||| |||| | ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |    
T  34034070 cctttttcaacaataaaaattatcaagagaatagtcatagacaaattaaatggacaatgagtttcttgcaaataacttatttatttacatttgaaaagac 34034169  T
Q  372 attattaatctattattaaacagacaattattgatgaaattgggttcttgaaacacattttacccaacgtttctaaatagcgatttttatgttaagtttc 471  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| |||  |||||| |||||   ||  ||||| ||||||||||||||||||||    
T  34034170 attattaatctattattaaacagacagttattgatgaaattgggttcttcaaatgcattttgcccaaacatttaaaataacgatttttatgttaagtttc 34034269  T
Q  472 taagatttgttaattttagt 491  Q
    ||||||||||||||||||||    
T  34034270 taagatttgttaattttagt 34034289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 234 - 369
Target Start/End: Complemental strand, 17769113 - 17768978
Alignment:
Q  234 gtttgatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagt 333  Q
    |||||||||| ||  |||||||||||||| || | || |||||||||||||||||||| || ||||||||| | |||||||||||||||| |||||||||    
T  17769113 gtttgatacttcccgtctcaataacaacaataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagt 17769014  T
Q  334 ttcttgcgaataacctatttatttacatttgaaaag 369  Q
    ||||||| ||||||||||||||||||||||||||||    
T  17769013 ttcttgcaaataacctatttatttacatttgaaaag 17768978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 234 - 369
Target Start/End: Original strand, 13517507 - 13517642
Alignment:
Q  234 gtttgatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagt 333  Q
    |||||||||| ||  |||||||||||||| || | || | |||||||||||||||||| || ||||||||| | |||||||||||||||| |||||||||    
T  13517507 gtttgatacttcccgtctcaataacaacaataaagaaacatttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagt 13517606  T
Q  334 ttcttgcgaataacctatttatttacatttgaaaag 369  Q
    ||||||| ||||||||||||||||||||||||||||    
T  13517607 ttcttgcaaataacctatttatttacatttgaaaag 13517642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 234 - 450
Target Start/End: Complemental strand, 16908790 - 16908575
Alignment:
Q  234 gtttgatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagt 333  Q
    |||||||||| ||| ||||||||||||   |||| ||  | |||||||| ||||||||||||||||||||| ||||| | |||||||||||||||| |||    
T  16908790 gtttgatacttccggtctcaataacaattatagagaaaac-ttttcaacgataaaaattattaagacaatagttataaataaattaaatggacaat-agt 16908693  T
Q  334 ttcttgcgaataacctatttatttacatttgaaaaggcattattaatcta-ttattaaacagacaattattgatgaaattgggttcttgaaacacatttt 432  Q
    ||||| | | |||||||||| ||||||||  ||||  ||||||||||||| ||| ||||||| ||||||| ||| || |||| || ||||||  ||||||    
T  16908692 ttctttcaagtaacctatttgtttacattgaaaaatacattattaatctatttagtaaacagtcaattatggataaatttggctttttgaaatgcatttt 16908593  T
Q  433 acccaacgtttctaaata 450  Q
    ||||||| ||||||||||    
T  16908592 acccaacttttctaaata 16908575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 312 - 438
Target Start/End: Complemental strand, 40528250 - 40528123
Alignment:
Q  312 acaaattaaatggacaatgagtttcttgcgaataacctatttatttacatttgaaaaggcattattaatcta-ttattaaacagacaattattgatgaaa 410  Q
    ||||||||| |||| | |||||||||| | |||||||||||| ||||||||  ||||| ||||||||||| | ||| |||||   ||| ||| ||| |||    
T  40528250 acaaattaagtggatattgagtttcttacaaataacctatttgtttacattgaaaaagacattattaatcaatttagtaaacgatcaaatatagataaaa 40528151  T
Q  411 ttgggttcttgaaacacattttacccaa 438  Q
    |||| |||||||||  ||||||||||||    
T  40528150 ttggcttcttgaaatgcattttacccaa 40528123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 38 - 198
Target Start/End: Original strand, 34033815 - 34033976
Alignment:
Q  38 caggggcgtagctcttcacatgggaggggtagtcttggcta-cccnnnnnnnntattatacttgaagtggtcggtatgaacttatatccggctacctcaa 136  Q
    |||||||||||| ||||| ||||||||||||| |||||||| |||        |||||| |||||| | ||||||||| | | ||||| ||||||| |||    
T  34033815 caggggcgtagcccttcatatgggaggggtagccttggctaccccaaaaaaaatattattcttgaattagtcggtatgtattgatatctggctaccccaa 34033914  T
Q  137 ataataaacattgagctactccaaataagttccgtcacaaaaatttacataaataataaagt 198  Q
     |||||||||||  |||||  |||| |||||  ||  ||||||||  |||||||||||||||    
T  34033915 ttaataaacatttggctacctcaaacaagtttagttgcaaaaattagcataaataataaagt 34033976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 327 - 413
Target Start/End: Complemental strand, 40361082 - 40360995
Alignment:
Q  327 aatgagtttcttgcgaataacctatttatttacatttgaaaaggcattattaatctattat-taaacagacaattattgatgaaattg 413  Q
    |||||||||||||| |||||||||||| |||| ||   ||||| ||||||||||||||| | ||||||| ||||||| ||| ||||||    
T  40361082 aatgagtttcttgcaaataacctatttgtttagatcataaaagacattattaatctattttgtaaacagtcaattatggataaaattg 40360995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 343 - 432
Target Start/End: Original strand, 7008942 - 7009032
Alignment:
Q  343 ataacctatttatttacatttgaaaaggcattattaatctattat-taaacagacaattattgatgaaattgggttcttgaaacacatttt 432  Q
    ||||||||||| | |||||| |||||||||||||||||||||| | ||||||  |  |||| ||| ||||||| ||||||||||| |||||    
T  7008942 ataacctatttgtgtacattggaaaaggcattattaatctattttgtaaacaatcgtttatggataaaattggtttcttgaaacagatttt 7009032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 280 - 362
Target Start/End: Complemental strand, 19948942 - 19948860
Alignment:
Q  280 aacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagtttcttgcgaataacctatttatttacatt 362  Q
    |||||| |||||||| ||||||||| | ||| ||  |||||||||||||||| |||||||| ||||| ||| || ||||||||    
T  19948942 aacaattaaaattatcaagacaatagtcataaacctattaaatggacaatgaatttcttgcaaataatctagttgtttacatt 19948860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 16908910 - 16908873
Alignment:
Q  118 ttatatccggctacctcaaataataaacattgagctac 155  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  16908910 ttatatccggctacctcaaataataaatattgagctac 16908873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 198
Target Start/End: Complemental strand, 17698808 - 17698708
Alignment:
Q  98 ttgaagtggtcggtatgaacttatatccggctacctcaaataataaacattgagctactccaaataagttccgtcacaaaaatttacataaataataaag 197  Q
    |||||||||| |||||| | || ||| ||| || ||||||||||||| |||||||||  ||||| || || |||  ||||||||  ||||||||||||||    
T  17698808 ttgaagtggttggtatgtatttttattcggttatctcaaataataaatattgagctatcccaaacaaatttcgttgcaaaaattagcataaataataaag 17698709  T
Q  198 t 198  Q
    |    
T  17698708 t 17698708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 157; Significance: 4e-83; HSPs: 2)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 101 - 494
Target Start/End: Original strand, 6496 - 6877
Alignment:
Q  101 aagtggtcggtatgaacttatatccggctacctcaaataataaacattgagctactccaaataagttccgtcacaaaaatttacataaataataaagtnn 200  Q
    |||||||||||||| | || ||| |||||||||||||||||||| |||||||||||||||| || || |||  ||||||||  |||||||||||||        
T  6496 aagtggtcggtatgtatttttattcggctacctcaaataataaatattgagctactccaaacaaatttcgttgcaaaaattagcataaataataaa--ta 6593  T
Q  201 nnnnnttaccacaagactaatagatttatttgtgttt----gatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattatta 296  Q
         |||| |||||| | |||||||||||||| |||    ||||||| ||||||||||||||||| |||| || | ||||||||||||||||||||       
T  6594 aaaaattactacaagattgatagatttatttgtatttatttgatactctcgatctcaataacaacactagagaaacttttttcaacaataaaaatta--- 6690  T
Q  297 agacaatatttatagacaaattaaatggacaatgagtttcttgcgaataacctatttatttacatttgaaaaggcattattaatctattattaaacagac 396  Q
    |||||||| | |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |           ||||||||  || |    
T  6691 agacaatagtcatagacaaattaaatggacaatgaatttcttgcaaataacctatttatttacatttgaaaagac-----------attattaaggagtc 6779  T
Q  397 aattattgatgaaattgggttcttgaaacacattttacccaacgtttctaaatagcgatttttatgttaagtttctaagatttgttaattttagtcct 494  Q
     |||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||    
T  6780 tattattgatgaaattgggttcttgaaacacattttgtccaacgtttataaatagcgatttttatgttaagtttctaagagtcgttaattttagtcct 6877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 6431 - 6474
Alignment:
Q  38 caggggcgtagctcttcacatgggaggggtagtcttggctaccc 81  Q
    |||||||||||| ||||| ||||||||||||| |||||||||||    
T  6431 caggggcgtagcccttcatatgggaggggtagccttggctaccc 6474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 8e-63; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 272 - 450
Target Start/End: Complemental strand, 29363644 - 29363467
Alignment:
Q  272 cctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagtttcttgcgaataacctatttatttacatttgaaaaggc 371  Q
    |||||||||||||||||||| || ||||||||| | |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |    
T  29363644 cctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttatttacatttgaaaagac 29363545  T
Q  372 attattaatctattattaaacagacaattattgatgaaattgggttcttgaaacacattttacccaacgtttctaaata 450  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||||  |||||  ||||||||||||||||    
T  29363544 attattaatctattattaaacaaacaattattgatgaaattcggttcttgaaacgtatttt-gccaacgtttctaaata 29363467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 234 - 387
Target Start/End: Original strand, 34729784 - 34729937
Alignment:
Q  234 gtttgatactcccgatctcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagt 333  Q
    |||||||||| ||  |||||||||||||| ||   ||  ||||||||||||||||||| || | ||||||| | |||||||| ||||||| |||||||||    
T  34729784 gtttgatacttcccgtctcaataacaacaataacgaaaactttttcaacaataaaaatgatcatgacaatagtcatagacaagttaaatgtacaatgagt 34729883  T
Q  334 ttcttgcgaataacctatttatttacatttgaaaaggcattattaatctattat 387  Q
    ||||||| ||||||||||||||| |||||| ||||| |||||||||||||||||    
T  34729884 ttcttgcaaataacctatttattaacatttaaaaagacattattaatctattat 34729937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 312 - 452
Target Start/End: Complemental strand, 1780735 - 1780593
Alignment:
Q  312 acaaattaaatggacaatgagtttcttgcgaataacctattt-atttacatttgaaaaggcattattaatcta-ttattaaacagacaattattgatgaa 409  Q
    |||||||||||||||| |||||||||||| ||||||| ||||  |||||||| |||||| ||||||||||||| ||| ||||| | ||||||| ||| ||    
T  1780735 acaaattaaatggacattgagtttcttgcaaataaccaatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaa 1780636  T
Q  410 attgggttcttgaaacacattttacccaacgtttctaaatagc 452  Q
    ||||| |||||||||  |||||||| |||| ||| ||||||||    
T  1780635 attggtttcttgaaatgcattttacacaacttttttaaatagc 1780593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 285 - 385
Target Start/End: Original strand, 24428798 - 24428901
Alignment:
Q  285 taaaaattattaagacaatatttata---gacaaattaaatggacaatgagtttcttgcgaataacctatttatttacatttgaaaaggcattattaatc 381  Q
    |||||||||||||||||||| | |||    |||||||||||||||| |||||||||||  |||||||||||| || |||||  ||||| |||||||||||    
T  24428798 taaaaattattaagacaatagtcataaacaacaaattaaatggacattgagtttcttgaaaataacctatttgttaacattgaaaaagacattattaatc 24428897  T
Q  382 tatt 385  Q
    ||||    
T  24428898 tatt 24428901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 275 - 362
Target Start/End: Original strand, 29486443 - 29486529
Alignment:
Q  275 ttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagtttcttgcgaataacctatttatttacatt 362  Q
    ||||||| | |||||||||||||||||||| | ||| ||||||||| |||||||| |||||||||| ||||||||||||  |||||||    
T  29486443 ttttcaagagtaaaaattattaagacaatagtcataaacaaattaattggacaat-agtttcttgcaaataacctattttcttacatt 29486529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 29486274 - 29486329
Alignment:
Q  109 ggtatgaacttatatccggctacctcaaataataaacattgagctactccaaataa 164  Q
    ||||| || ||||||| |||||||||||||||||||||| |||||| |||||||||    
T  29486274 ggtataaaattatatctggctacctcaaataataaacatcgagctattccaaataa 29486329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 343 - 452
Target Start/End: Complemental strand, 22956504 - 22956394
Alignment:
Q  343 ataacctatttatttacatttgaaaaggcattattaatctattat-taaacagacaattattgatgaaattgggttcttgaaacacattttacccaacgt 441  Q
    |||| |||||| | |||||| |||||   |||||||||||||| | |||| || || |||| ||| |||||||||||||||||||||||||| | ||| |    
T  22956504 ataatctatttgtgtacattggaaaatatattattaatctattttgtaaatagtcatttatggataaaattgggttcttgaaacacattttatcaaactt 22956405  T
Q  442 ttctaaatagc 452  Q
    || ||||||||    
T  22956404 ttttaaatagc 22956394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 343 - 452
Target Start/End: Original strand, 23831888 - 23831998
Alignment:
Q  343 ataacctatttatttacatttgaaaaggcattattaatctattat-taaacagacaattattgatgaaattgggttcttgaaacacattttacccaacgt 441  Q
    |||| |||||| | |||||| |||||   |||||||||||||| | |||| || || |||| ||| |||||||||||||||||||||||||| | ||| |    
T  23831888 ataatctatttgtgtacattggaaaatatattattaatctattttgtaaatagtcatttatggataaaattgggttcttgaaacacattttatcaaactt 23831987  T
Q  442 ttctaaatagc 452  Q
    || ||||||||    
T  23831988 ttttaaatagc 23831998  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 22956707 - 22956659
Alignment:
Q  119 tatatccggctacctcaaataataaacattgagctactccaaataagtt 167  Q
    ||||||| |||||| ||||||||||| |||||||||| ||||| |||||    
T  22956707 tatatccagctaccccaaataataaaaattgagctaccccaaacaagtt 22956659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 23831685 - 23831733
Alignment:
Q  119 tatatccggctacctcaaataataaacattgagctactccaaataagtt 167  Q
    ||||||| |||||| ||||||||||| |||||||||| ||||| |||||    
T  23831685 tatatccagctaccccaaataataaaaattgagctaccccaaacaagtt 23831733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 27673821 - 27673861
Alignment:
Q  41 gggcgtagctcttcacatgggaggggtagtcttggctaccc 81  Q
    ||||||||| ||||| ||||||||||||| |||||||||||    
T  27673821 gggcgtagcccttcatatgggaggggtagccttggctaccc 27673861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1554 (Bit Score: 75; Significance: 4e-34; HSPs: 2)
Name: scaffold1554
Description:

Target: scaffold1554; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 321 - 439
Target Start/End: Original strand, 811 - 929
Alignment:
Q  321 atggacaatgagtttcttgcgaataacctatttatttacatttgaaaaggcattattaatctattattaaacagacaattattgatgaaattgggttctt 420  Q
    ||||| |||||||||| ||| |||||||||||||| ||||| |||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  811 atggataatgagtttcatgcaaataacctatttatatacatctgaaaagatattattaatctattattaaacagacatttattgatgaaattgggttctt 910  T
Q  421 gaaacacattttacccaac 439  Q
    ||||  |||||| ||||||    
T  911 gaaatgcattttgcccaac 929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1554; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 253 - 304
Target Start/End: Original strand, 756 - 807
Alignment:
Q  253 aataacaacagtagataagcctttttcaacaataaaaattattaagacaata 304  Q
    |||||||||| |||| || ||||||||||||||||||||||| |||||||||    
T  756 aataacaacaatagagaaacctttttcaacaataaaaattatcaagacaata 807  T

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Target: scaffold0186 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 251 - 385
Target Start/End: Original strand, 22670 - 22804
Alignment:
Q  251 tcaataacaacagtagataagcctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagtttcttgcgaataaccta 350  Q
    |||||||||||| |||| ||  ||||||||| |||||||||||| ||||||||| | ||| ||| ||||||||| || ||| |||||||| |||||||||    
T  22670 tcaataacaacaatagagaaaactttttcaataataaaaattatcaagacaatagtcataaacatattaaatgggcattgaatttcttgcaaataaccta 22769  T
Q  351 tttatttacatttgaaaaggcattattaatctatt 385  Q
    ||| |||||||| |||||  |||||||||||||||    
T  22770 tttgtttacattggaaaaaacattattaatctatt 22804  T

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Target: scaffold1709 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold1709
Description:

Target: scaffold1709; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 37 - 257
Target Start/End: Original strand, 1225 - 1451
Alignment:
Q  37 acaggggcgtagctcttcacatgggaggggtagtcttggctacccnnnnnnnnt--attatacttgaagtggtcggtatgaacttatatccggctacctc 134  Q
    ||||||||||| | ||||| ||||||||||||| |||||||||||           ||||| ||| |||||||||||||| | || |||||||||||  |    
T  1225 acaggggcgtaccccttcatatgggaggggtagccttggctacccaaaaaaaaataattattctttaagtggtcggtatgtatttttatccggctactcc 1324  T
Q  135 aaataataaacattgagctactccaaataagttccgtcacaaaaatttacataaataataaagtnnnnnnnttaccacaagactaatagatttatttg-- 232  Q
    |||||||||| ||||| |||| |||||||| || |||  |||||||| ||| ||||||| ||||       |||| |||||| | |||||||||||||      
T  1325 aaataataaatattgaactaccccaaataaatttcgttgcaaaaattaacacaaataatgaagtaaaaaaattactacaagattgatagatttatttgta 1424  T
Q  233 --tgtttgatactcccgatctcaataa 257  Q
      |||||||||||||||||||||||||    
T  1425 tttgtttgatactcccgatctcaataa 1451  T

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Target: scaffold0002 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 275 - 401
Target Start/End: Complemental strand, 428459 - 428333
Alignment:
Q  275 ttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagtttcttgcgaataacctatttatttacatttgaaaaggcatt 374  Q
    ||||||||  |||||||||||||||||||| | ||| |||||||||||||||||| |||||||| | ||||| ||||||  ||||||| |||||  ||||    
T  428459 ttttcaacggtaaaaattattaagacaatagtaataaacaaattaaatggacaat-agtttcttacaaataatctatttgcttacattggaaaatacatt 428361  T
Q  375 attaatcta-ttattaaacagacaatta 401  Q
    ||||||||| ||| ||||||| ||||||    
T  428360 attaatctatttagtaaacagtcaatta 428333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 118 - 198
Target Start/End: Complemental strand, 428620 - 428539
Alignment:
Q  118 ttatatccggctacctcaaataataaacattgagctactccaaataagttccg-tcacaaaaatttacataaataataaagt 198  Q
    |||||||| ||||||||||||||||||||||||||||| | |||||| ||| | |  |||||||| | ||||||||||||||    
T  428620 ttatatccagctacctcaaataataaacattgagctaccctaaataaattcagttgtcaaaaattaatataaataataaagt 428539  T

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Target: scaffold0110 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 273 - 363
Target Start/End: Complemental strand, 7009 - 6919
Alignment:
Q  273 ctttttcaacaataaaaattattaagacaatatttatagacaaattaaatggacaatgagtttcttgcgaataacctatttatttacattt 363  Q
    |||| ||||||||||||||||| ||||||||| | ||| ||| |||||||| ||||| ||||| |||| |||||| ||||  |||||||||    
T  7009 ctttgtcaacaataaaaattatcaagacaatagtcataaacagattaaatgaacaataagtttattgcaaataacatattagtttacattt 6919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 7182 - 7119
Alignment:
Q  105 ggtcggtatgaacttatatccggctacctcaaataataaacattgagctactccaaataagttc 168  Q
    |||||||||| | ||||||||| ||||| |||||||||||||||||| ||| ||||| ||||||    
T  7182 ggtcggtatgtatttatatccgactaccccaaataataaacattgagttaccccaaacaagttc 7119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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