View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4650-Insertion-7 (Length: 541)

Name: NF4650-Insertion-7
Description: NF4650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4650-Insertion-7
NF4650-Insertion-7
[»] chr4 (13 HSPs)
chr4 (81-470)||(38224432-38224828)
chr4 (81-318)||(38945624-38945861)
chr4 (4-84)||(38224311-38224391)
chr4 (161-337)||(10470105-10470281)
chr4 (4-84)||(38945502-38945582)
chr4 (148-337)||(5203964-5204153)
chr4 (4-67)||(51303308-51303371)
chr4 (230-336)||(10484032-10484138)
chr4 (357-407)||(46762898-46762948)
chr4 (4-67)||(5204278-5204342)
chr4 (9-67)||(9536400-9536458)
chr4 (263-332)||(51302999-51303068)
chr4 (5-61)||(10470425-10470481)
[»] chr1 (1 HSPs)
chr1 (81-345)||(1928859-1929123)
[»] chr2 (1 HSPs)
chr2 (176-338)||(35060931-35061093)
[»] chr7 (1 HSPs)
chr7 (275-337)||(29339730-29339792)


Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 81 - 470
Target Start/End: Original strand, 38224432 - 38224828
Alignment:
Q  81 tattcattgtgggtttctctggtttcatttcaggatcatttgacatcttgttgactgagctttctattatctatcacaatctgatcatggagaaggattt 180  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38224432 tattcattgcgggtttctctggtttcattccaggatcatttgacatcttgttgactgagctttctattatctatcacaatctgatcatggagaaggattt 38224531  T
Q  181 gagttatacaaagcttgtttgctactctaattatcttgtttgcgttaatcttataaatggtcccattgagtgttatcacatctatgttgttctcatccaa 280  Q
    | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  38224532 gggttatacaaagcttgtttgctactctgattatcttgtttgcgttaatcttataaatggccccattgagtgttatcacatctatgttgttctcatcaaa 38224631  T
Q  281 gacataaagcaattgcttcaccataccagcgtaacggtttctcacactcttagagagaaaaat-------catacttcatggcaaagcttagagcttctt 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       || |||| ||||||||||||||||||||||    
T  38224632 gacataaagcaattgcttcaccataccagcgtaacggtttctcacactcttagagagaaaaatcagtgtgcagacttaatggcaaagcttagagcttctt 38224731  T
Q  374 ctgatattgatcttcttcttcacgagttttcccctgttggtcttgttaatctcatcggaagcgatgccgctcgcattttgttcctcagggaatagtt 470  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  38224732 ctgatattgatcttcctcttcacgagttttcccctgttggtcttgttaatctcgtcggaagcgatgccgcttgcattttgttcctcagggaatagtt 38224828  T

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Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 81 - 318
Target Start/End: Original strand, 38945624 - 38945861
Alignment:
Q  81 tattcattgtgggtttctctggtttcatttcaggatcatttgacatcttgttgactgagctttctattatctatcacaatctgatcatggagaaggattt 180  Q
    ||||||||| | ||||||||| ||||||| ||||||||||||||||||||||| | |||||||||  ||| ||||||  ||||||||||| |||||||||    
T  38945624 tattcattgcgagtttctctgatttcattccaggatcatttgacatcttgttggccgagctttctgctatttatcacggtctgatcatggcgaaggattt 38945723  T
Q  181 gagttatacaaagcttgtttgctactctaattatcttgtttgcgttaatcttataaatggtcccattgagtgttatcacatctatgttgttctcatccaa 280  Q
    | |||||||| ||||||||||||||||  ||| |||||||||| |||||||||||||||  || ||||||   || || |||||||||||| ||||||||    
T  38945724 gggttatacatagcttgtttgctactcggattctcttgtttgcattaatcttataaatgacccgattgagacgtaccatatctatgttgttttcatccaa 38945823  T
Q  281 gacataaagcaattgcttcaccataccagcgtaacggt 318  Q
    ||||||||||||||||||||||||| || |||||||||    
T  38945824 gacataaagcaattgcttcaccataacaacgtaacggt 38945861  T

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Target: chr4; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 38224311 - 38224391
Alignment:
Q  4 aacaggtacatcagatggaataatattaatatttcgggtgctattcttaatgtggatggtagttaccatgacactcctatt 84  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38224311 aacaggtacatcagatggaataataataatatttcgggtgctattcttaatgtggatggtagttagcatgacactcctatt 38224391  T

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Target: chr4; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 161 - 337
Target Start/End: Complemental strand, 10470281 - 10470105
Alignment:
Q  161 ctgatcatggagaaggatttgagttatacaaagcttgtttgctactctaattatcttgtttgcgttaatcttataaatggtcccattgagtgttatcaca 260  Q
    ||||||||||  || |||||||||||| |||| |||| |||||| ||| ||| ||||| |||||| || ||||| ||||||||||| | | | || || |    
T  10470281 ctgatcatggctaaagatttgagttatgcaaaacttgcttgctattctgattctcttgcttgcgtcaaccttattaatggtcccatcgtgagataccata 10470182  T
Q  261 tctatgttgttctcatccaagacataaagcaattgcttcaccataccagcgtaacggtttctcacactcttagagag 337  Q
    ||||||| |||||||||||||| ||||| ||| ||||||| || ||||    |||||||||||||||||||||||||    
T  10470181 tctatgtggttctcatccaagagataaaacaaatgcttcaacaaaccaatccaacggtttctcacactcttagagag 10470105  T

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Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 38945502 - 38945582
Alignment:
Q  4 aacaggtacatcagatggaataatattaatatttcgggtgctattcttaatgtggatggtagttaccatgacactcctatt 84  Q
    |||| |||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||    
T  38945502 aacaagtacgtcagatggaataataataatatttcaggtgctattcttaatgtggatggtagttgccatgacactcatatt 38945582  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 148 - 337
Target Start/End: Complemental strand, 5204153 - 5203964
Alignment:
Q  148 tatctatcacaatctgatcatggagaaggatttgagttatacaaagcttgtttgctactctaattatcttgtttgcgttaatcttataaatggtcccatt 247  Q
    ||||||||||   ||||||||||  ||||||||| | ||| || | |||  |||||| ||| ||| ||||| |||| | || |||||| |||| ||||||    
T  5204153 tatctatcacgggctgatcatggcaaaggatttgggatatgcagaactttcttgctattctgattctcttgcttgcatcaaccttatatatggccccatt 5204054  T
Q  248 gagtgttatcacatctatgttgttctcatccaagacataaagcaattgcttcaccataccagcgtaacggtttctcacactcttagagag 337  Q
    ||| | |  || ||||||| |||| |||| ||||||||||| ||| ||||||| || | ||  |||||||||||||||||||||||||||    
T  5204053 gagaggttccatatctatgctgttatcatacaagacataaaacaaatgcttcaacaaatcaatgtaacggtttctcacactcttagagag 5203964  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 51303371 - 51303308
Alignment:
Q  4 aacaggtacatcagatggaataatattaatatttcgggtgctattcttaatgtggatggtagtt 67  Q
    ||||||||||||||||||||  |||  ||| |||| ||||||||||||||||||||||| ||||    
T  51303371 aacaggtacatcagatggaaagataacaatttttcaggtgctattcttaatgtggatggaagtt 51303308  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 336
Target Start/End: Complemental strand, 10484138 - 10484032
Alignment:
Q  230 cttataaatggtcccattgagtgttatcacatctatgttgttctcatccaagacataaagcaattgcttcaccataccagcgtaacggtttctcacactc 329  Q
    ||||| ||||||||||||||| | || || |||| |||||||||||||||||| ||||| | | ||||||| || | ||  | |||  ||||||||||||    
T  10484138 cttattaatggtcccattgagagataccatatctctgttgttctcatccaagagataaaaccaatgcttcaacaaatcaatgcaacaatttctcacactc 10484039  T
Q  330 ttagaga 336  Q
    |||||||    
T  10484038 ttagaga 10484032  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 407
Target Start/End: Original strand, 46762898 - 46762948
Alignment:
Q  357 aaagcttagagcttcttctgatattgatcttcttcttcacgagttttcccc 407  Q
    ||||||||||||| ||||||||||||| ||||||||||| || ||||||||    
T  46762898 aaagcttagagctgcttctgatattgagcttcttcttcatgatttttcccc 46762948  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 5204342 - 5204278
Alignment:
Q  4 aacaggtacatcagatggaa-taatattaatatttcgggtgctattcttaatgtggatggtagtt 67  Q
    ||||||||||| |||||||| |||||  ||| |||| ||||||||||||||||||||||| ||||    
T  5204342 aacaggtacattagatggaaataataacaatttttcaggtgctattcttaatgtggatggaagtt 5204278  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 9536400 - 9536458
Alignment:
Q  9 gtacatcagatggaataatattaatatttcgggtgctattcttaatgtggatggtagtt 67  Q
    |||||||||||||||||| | |||||| | |||||| |||||||| |||||||| ||||    
T  9536400 gtacatcagatggaataacaataatatcttgggtgcaattcttaacgtggatggaagtt 9536458  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 332
Target Start/End: Complemental strand, 51303068 - 51302999
Alignment:
Q  263 tatgttgttctcatccaagacataaagcaattgcttcaccataccagcgtaacggtttctcacactctta 332  Q
    ||||||||| |||| ||||||||||| ||| ||||||| ||   ||  ||||||||||||||||||||||    
T  51303068 tatgttgttatcatacaagacataaaacaaatgcttcatcaactcaatgtaacggtttctcacactctta 51302999  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 10470481 - 10470425
Alignment:
Q  5 acaggtacatcagatggaataatattaatatttcgggtgctattcttaatgtggatg 61  Q
    ||||||||||||||||||| |||| |||| || |  ||| |||||||||||||||||    
T  10470481 acaggtacatcagatggaacaataataattttacaagtgttattcttaatgtggatg 10470425  T

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Target: chr1 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 81 - 345
Target Start/End: Complemental strand, 1929123 - 1928859
Alignment:
Q  81 tattcattgtgggtttctctggtttcatttcaggatcatttgacatcttgttgactgagctttctattatctatcacaatctgatcatggagaaggattt 180  Q
    |||||||||||||| |||||| |||||||  |||||||||||||||||||||| | |||||||||  |||||||||   |||||||||||||||||||||    
T  1929123 tattcattgtgggtatctctgatttcattctaggatcatttgacatcttgttggccgagctttctgctatctatcatggtctgatcatggagaaggattt 1929024  T
Q  181 gagttatacaaagcttgtttgctactctaattatcttgtttgcgttaatcttataaatggtcccattgagtgttatcacatctatgttgttctcatccaa 280  Q
    |||||||||| ||||||||||||||||| ||| |||||||||| |||||||||||||||  || |||||| | || | ||||||||||||||||||||||    
T  1929023 gagttatacagagcttgtttgctactctgattctcttgtttgcattaatcttataaatgaccctattgagaggtacctcatctatgttgttctcatccaa 1928924  T
Q  281 gacataaagcaattgcttcaccataccagcgtaacggtttctcacactcttagagagaaaaatca 345  Q
     |||||||| ||||| ||||||||| || ||||||| ||||||||||||||||||||| ||||||    
T  1928923 aacataaagtaattgtttcaccataacaacgtaacgatttctcacactcttagagagagaaatca 1928859  T

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Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 176 - 338
Target Start/End: Complemental strand, 35061093 - 35060931
Alignment:
Q  176 gatttgagttatacaaagcttgtttgctactctaattatcttgtttgcgttaatcttataaatggtcccattgagtgttatcacatctatgttgttctca 275  Q
    |||||| ||||| || | |||| |||||| ||| ||| ||||| |||| | || ||||| ||||||||||||||  | || || |||||  |||||||||    
T  35061093 gatttgggttatgcataacttgcttgctattctgattctcttgcttgcatcaaccttattaatggtcccattgaaaggtaccatatctacattgttctca 35060994  T
Q  276 tccaagacataaagcaattgcttcaccataccagcgtaacggtttctcacactcttagagaga 338  Q
    ||||||||||||| ||| ||||||| || ||||  ||||| ||||||||||||||||||||||    
T  35060993 tccaagacataaaacaaatgcttcaacaaaccaatgtaacagtttctcacactcttagagaga 35060931  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 337
Target Start/End: Original strand, 29339730 - 29339792
Alignment:
Q  275 atccaagacataaagcaattgcttcaccataccagcgtaacggtttctcacactcttagagag 337  Q
    |||||||||||||| |||||||| ||||| | ||  || |||||||||||| |||||||||||    
T  29339730 atccaagacataaaacaattgctccaccaaatcaatgtgacggtttctcacgctcttagagag 29339792  T

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