View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4650-Insertion-8 (Length: 302)

Name: NF4650-Insertion-8
Description: NF4650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4650-Insertion-8
NF4650-Insertion-8
[»] chr1 (1 HSPs)
chr1 (28-302)||(46843585-46843859)


Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 28 - 302
Target Start/End: Original strand, 46843585 - 46843859
Alignment:
Q  28 cagtgaagtgaattcaaaaccagagaacaaaactgttctgtttggatctcagttgaggattcagattcctccctttttaccaacaatttcaactttttct 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  46843585 cagtgaagtgaattcaaaaccagagaacaaaactgttctgtttggatctcagttgaagattcagattcctccctttttaccaacaatttcaactttttct 46843684  T
Q  128 tcttcatctgaatcatcacctttatctagaggtgatttcagcatcaacacaagaaattctcatttgggttcttcttctggaagcttttcactctctcctg 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46843685 tcttcatctgaatcatcacctttatctagaggtgatttcagcatcaacacaagaaattctcatttgggttcttcttctggaagcttttcactctctcctg 46843784  T
Q  228 tgggaaaatcttcatttgggtgtgctaatgaaattgaaacttcaaattctactcatggagtcttcaaagggtgtc 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46843785 tgggaaaatcttcatttgggtgtgctaatgaaattgaaacttcaaattctactcatggagtcttcaaagggtgtc 46843859  T

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