View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4650-Insertion-9 (Length: 431)
Name: NF4650-Insertion-9
Description: NF4650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4650-Insertion-9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 7 - 431
Target Start/End: Complemental strand, 53274373 - 53273951
Alignment:
| Q |
7 |
agtctgatggaacttttccattgcaaaaccgaccagtagggatgcctccattgaaatctttaccatatggaagaaaattgcacctagcatatgttttcat |
106 |
Q |
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| T |
53274373 |
agtctgatggaacttttccattgcaaaaccgaccagtagggatgcctccattgaaatctttaccatatggaagaaaattgcacctagcatatgttttcat |
53274274 |
T |
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| Q |
107 |
gttattattgttgttgcccgtatccatgattgaatctccaaacacaaatactgctggaaatgaaacatttggtggaagctctagtgttgccaaactagcc |
206 |
Q |
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| T |
53274273 |
gttattattgttgttgcccgtatccatgattgaatctccaaacacaaatactgctggaaatgaaacatttggtggaagctctattgttgccaaactagcc |
53274174 |
T |
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| Q |
207 |
ttagttgtgtaagaaacaactcccaataatatgaagaaacaaatcatcaaggtacacattgaagaataagtttagcta---cttgcaaatgctcactctt |
303 |
Q |
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| T |
53274173 |
ttagttgtgtaagaaacaactcccaataatatgaagaaataaatcattaaggtacacattgaagaataagtctagctacttcttgcaaatgctcactctt |
53274074 |
T |
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| Q |
304 |
tcttccctcccttttcttttcagcttaattttttcactcatttattgcttgcaagaaatgccttcatctaacttctgactgcacgaactattttgtctgt |
403 |
Q |
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| T |
53274073 |
tcttccctcc-----cttttcagctgaattttttcactcatttattgcttgcaagaaatgccttcatctaacttctgactgcacgaactattttgtctgt |
53273979 |
T |
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| Q |
404 |
tttttcatagtagtatttaattctaaca |
431 |
Q |
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| T |
53273978 |
tttttcatagtagtatttaattctaaca |
53273951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 184
Target Start/End: Complemental strand, 8231178 - 8231001
Alignment:
| Q |
7 |
agtctgatggaacttttccattgcaaaaccgaccagtagggatgcctccattgaaatctttaccatatggaagaaaattgcacctagcatatgttttcat |
106 |
Q |
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||||||| |||||||||||||||| ||| | || || || || ||||| || |||||||| ||||| || |||||||||| | ||| |||| ||| |
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| T |
8231178 |
agtctgagggaacttttccattgctaaatcttccggttggaattcctcctttaaaatctttcccataaggtggaaaattgcaacgagctgttgttctcaa |
8231079 |
T |
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| Q |
107 |
gttattattgttgttgcccgtatccatgattgaatctccaaacacaaatactgctggaaatgaaacatttggtggaag |
184 |
Q |
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| T |
8231078 |
attgttgttattgttacctgtatccacgatagaatctccaaacaccaacactgctggaactgaaacatttggtggaag |
8231001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 126 - 181
Target Start/End: Complemental strand, 8252637 - 8252582
Alignment:
| Q |
126 |
gtatccatgattgaatctccaaacacaaatactgctggaaatgaaacatttggtgg |
181 |
Q |
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| T |
8252637 |
gtatccatgattgaatctccaaatacaaacactgctggaaacgaagcatttggtgg |
8252582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 8270210 - 8270152
Alignment:
| Q |
126 |
gtatccatgattgaatctccaaacacaaatactgctggaaatgaaacatttggtggaag |
184 |
Q |
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| T |
8270210 |
gtatccgtaattgaatctccaaacacaaacactgctggaattgaaacatttggttgaag |
8270152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 165
Target Start/End: Complemental strand, 8242661 - 8242622
Alignment:
| Q |
126 |
gtatccatgattgaatctccaaacacaaatactgctggaa |
165 |
Q |
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| T |
8242661 |
gtatccatgattgaatctccaaacacaaacactgctggaa |
8242622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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