View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4650_low_2 (Length: 340)
Name: NF4650_low_2
Description: NF4650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4650_low_2 |
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| [»] scaffold0411 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 31 - 322
Target Start/End: Complemental strand, 1221762 - 1221464
Alignment:
| Q |
31 |
ttaatcagaagatgataatatggttatgacttatgagacaagagtgttctgcttagtannnnnnnn--acctcaatgttacttttccctgcttaatcagt |
128 |
Q |
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| T |
1221762 |
ttaatcagaagatgataatatggttatgacttatgagacaagagtgttctgcttagttttttttttttacctcaatgttacttttccctgcttaatcagt |
1221663 |
T |
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| Q |
129 |
gtcagttcacaagatcattatcactcattgatacattatagtacatcttagtctcagtagttaagtgaactgaggttactttcatgtaatgataggaaat |
228 |
Q |
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| T |
1221662 |
gtcagttcacaagatcattatcactcattgatacattgtagtacatcttagtctcagtagttaagtgaactgaggttactttcatgtaatgataggaaat |
1221563 |
T |
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| Q |
229 |
tatgattaga---ttgtgtatataccagaatactttaaataaattcacgacatgccacattcaccatgttcaataatgtgtgtctc--ctttttgtttc |
322 |
Q |
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| T |
1221562 |
tatgattagattgttgtgtatataccagaatactttaaataaattcacgacatgccaccttcaccatgttcaataatgtgtgtctcttctttttgtttc |
1221464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 198 - 289
Target Start/End: Complemental strand, 55858821 - 55858730
Alignment:
| Q |
198 |
ctgaggttactttcatgtaatgataggaaattatgattagattgtgtatataccagaatactttaaataaattcacgacatgccacattcac |
289 |
Q |
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| T |
55858821 |
ctgaggttactttcatgtagtgataggaaattatgaccggattgtgtatataccacaatacttcaaataaattcacaacatgccaccttcac |
55858730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0411 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0411
Description:
Target: scaffold0411; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 48 - 289
Target Start/End: Complemental strand, 10734 - 10497
Alignment:
| Q |
48 |
atatggttatgacttatgagacaagagtgttctgcttagtannnnnnnnacctcaatgttacttttccctgcttaatcagtgtcagttcacaagatcatt |
147 |
Q |
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| T |
10734 |
atatggttatgacttatgtgacaagagtgttctgctaatt---ctttgtacctcaatgttacttttccttgcttaatcaatgtcagttctcaagatgata |
10638 |
T |
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| Q |
148 |
atcactcattgatacattatagtacatcttagtctcagtagttaagtgaactgaggttactttcatgtaatgataggaaattatgattagattgtgtata |
247 |
Q |
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|||||| |||| |||||| ||||| || |||||||| || |||| ||||||||||||||||||||||| |||||| ||||||||||| ||||||||||| |
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| T |
10637 |
atcact-attggtacattgtagtatattttagtctcggtggttatctgaactgaggttactttcatgtagtgatagaaaattatgattggattgtgtata |
10539 |
T |
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| Q |
248 |
taccagaatactttaaataaattcacgacatgccacattcac |
289 |
Q |
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| T |
10538 |
taccaaaatacctcaaataaatttacaacatgccaccttcac |
10497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 198 - 289
Target Start/End: Original strand, 29275777 - 29275868
Alignment:
| Q |
198 |
ctgaggttactttcatgtaatgataggaaattatgattagattgtgtatataccagaatactttaaataaattcacgacatgccacattcac |
289 |
Q |
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||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||| |||||||||||| ||||||||| ||||| |
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| T |
29275777 |
ctgaggttactttcatgtagtgataggaaattatgaccggattgtgtatataccacaatacttcaaataaattcacaacatgccaccttcac |
29275868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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