View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4650_low_3 (Length: 273)
Name: NF4650_low_3
Description: NF4650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4650_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 24871716 - 24871954
Alignment:
| Q |
19 |
aaccaaatgcccacttcgtaatatacagcaatacccaatcgacatcatccaagccagatcaaaatgtgcgaaataattgaaatttataccaatacacttc |
118 |
Q |
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| T |
24871716 |
aaccaaatgcccacttcgtaatatacagcaatgcccaatcgacatcatccaagccagttcaacatgtgcgaaatagttgaaatttataccaatacacttc |
24871815 |
T |
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| Q |
119 |
agcacgaaatagtttaatcatatgcacatgatgtttcgttttaatcttgttttctagtggcagtttctttaattacaatctaatcttgttttcttatggc |
218 |
Q |
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| T |
24871816 |
agcacgaaatagtttaatcatatgcacatgatgtttcgttttaatcttgttttctagtggctgtttctttaattacaatctaatcttgttttcttatggc |
24871915 |
T |
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| Q |
219 |
agtttctttaattacaatatcatcgagactacaaactaa |
257 |
Q |
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| T |
24871916 |
agtttctttaattacaatataatcgagactacaaactaa |
24871954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 95 - 256
Target Start/End: Complemental strand, 24874789 - 24874627
Alignment:
| Q |
95 |
ttgaaattt-ataccaatacacttcagcacgaaatagtttaatcatatgcacatgatgtttcgttttaatcttgttttctagtggcagtttctttaatta |
193 |
Q |
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| T |
24874789 |
ttgaaatttgataccaatacacttcagcacgaaatagtttaatcatatgcacatgatgtttcgctttaatcttgttttctagtggcagtttctttaatta |
24874690 |
T |
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| Q |
194 |
caatctaatcttgttttcttatggcagtttctttaattacaatatcatcgagactacaaacta |
256 |
Q |
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| T |
24874689 |
gaatctaatcttgttttcttatggcagtttctttaattacaatatcatcgagactacaaacta |
24874627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 24874880 - 24874822
Alignment:
| Q |
33 |
ttcgtaatatacagcaatacccaatcgacatcatccaagccagatcaaaatgtgcgaaa |
91 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || |||| |||||||||| |
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| T |
24874880 |
ttcgtaatatacagcaatacccaatcgacatcatccaagctaggtcaacatgtgcgaaa |
24874822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 24858075 - 24858043
Alignment:
| Q |
225 |
tttaattacaatatcatcgagactacaaactaa |
257 |
Q |
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| T |
24858075 |
tttaattacaatatcatcgagactccaaactaa |
24858043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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