View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4651-Insertion-1 (Length: 1098)
Name: NF4651-Insertion-1
Description: NF4651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4651-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 694 - 1063
Target Start/End: Complemental strand, 31553913 - 31553543
Alignment:
| Q |
694 |
gtgattgaatatatgcataaaaatttttacactattttttgatgagtcgttccttccattcacattaacacaaggtatgaaactttgacccgtttaaaga |
793 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31553913 |
gtgattgaatatatgcataaaattttttacactattttttgatgagtcgttccttccaatcacattaacacaaggtatgaaactttgacccgtttaaaga |
31553814 |
T |
|
| Q |
794 |
tttgaatatagttccactcgaacaaatatgatattgataaatttggtacgatgatacatatctattaaactcataaagga-aaaataaaataaaggtgca |
892 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31553813 |
tttgaatatagttccactcgaacaaatatgatattgataaatttggtacgatgatacatatctattaaactcataaaggaaaaaataaaataaaggtgca |
31553714 |
T |
|
| Q |
893 |
tgcaccttgatggctctacggtaggtggtagag-aaagaggaaatgggagagtgaaaaacccttcaattacaagcatgtactctttccttaaactctcag |
991 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31553713 |
tgcaccttgatggctctacggtaggtggtagagaaaagaggaaatgggagagtgaaaaacccttcaattacaagcatgtactctttccttaaactctcag |
31553614 |
T |
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| Q |
992 |
tccattcatctggatcaaaactcatcagctgtttaactgtcagctcaaatgttattctgcaacaaaacaaat |
1063 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
31553613 |
tccattcatctggatcaaaactcatcagctgtttaactgtcaactcaaatgtta-tctgcaacaaaacaaat |
31553543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 311 - 628
Target Start/End: Complemental strand, 31554294 - 31553979
Alignment:
| Q |
311 |
ttatattgtggtaattaattacgtaccttgagttgtgccaaggctaaaggagtttcagtgagaaatttgatggcaagagtcataattgtagaagtagttt |
410 |
Q |
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| T |
31554294 |
ttatattgtggtaattaattacgtaccttgagttgtgccaaggctaaaggagtttcagtgagaaatttgatggcaagagtcataattgtagaagtagttt |
31554195 |
T |
|
| Q |
411 |
cataaccagcaacgagcaaagccaacataaaatcaactatttcctcgtttgagaactgttcaccagatgccaacaatgctccaagcatgtcattcttttt |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31554194 |
cataaccagcaacgagcaaagccaacataaaatcaactatttcctcgtttgagaactgttcaccagatgccaacaatgctccaagcatgtcattcttttt |
31554095 |
T |
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| Q |
511 |
ctctatgcctatttcattctcttttctcctctgcctcactactagtgtcagtgcctctgccacctttgttcttgcctaaaaatatcaaattacacacata |
610 |
Q |
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| T |
31554094 |
ctctatgcctatttcattctcttttctcctctgcctcactactagtgtcagtgcctctgccacctttgttcttgcctaaaaatatcaaattacacaca-- |
31553997 |
T |
|
| Q |
611 |
tatactaatttacttgtc |
628 |
Q |
| |
|
|||||||||||||||||| |
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| T |
31553996 |
tatactaatttacttgtc |
31553979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 68 - 277
Target Start/End: Complemental strand, 31554519 - 31554310
Alignment:
| Q |
68 |
tgtttgttcttccacatgaaaaaagtaaacaagatgcacgtgtaattttgtatcgtagctataagtgtccatgtagggtattaagttccttaaggaactt |
167 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31554519 |
tgtttgttcttccacatgaaaaaagtaaacaagatgcacgtgtaattttgtatcgtagctataagtgtccatgtagggtattaagttccttaaggaactt |
31554420 |
T |
|
| Q |
168 |
gaataggatcaccctaatttgtcctcaattaaaatagtctttggttagagtttataacacaaaatattctattaacacaaacaaaatggaatcaaagaag |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31554419 |
gaataggatcaccctaatttgtcctcaattaaaatagtctttggttagagtttataacacaaaatattctattaacacaaacaaaatggaatcaaaggag |
31554320 |
T |
|
| Q |
268 |
tctccgtgaa |
277 |
Q |
| |
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|||||||||| |
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| T |
31554319 |
tctccgtgaa |
31554310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 31554583 - 31554540
Alignment:
| Q |
7 |
aatctaaaccccatttcatggaaatatcatactatgtatcaacc |
50 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31554583 |
aatctaaaccccatttcatggaaatatcatactatgtatcaacc |
31554540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 7e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 946 - 1046
Target Start/End: Complemental strand, 35476157 - 35476057
Alignment:
| Q |
946 |
aaaaacccttcaattacaagcatgtactctttccttaaactctcagtccattcatctggatcaaaactcatcagctgtttaactgtcagctcaaatgtta |
1045 |
Q |
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||||| |||||||| || || | |||||||||||||| | |||||||||||||| |||||||||||||||||||||| || ||||||| |||||| |||| |
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| T |
35476157 |
aaaaatccttcaatcacgagaacgtactctttccttagagtctcagtccattcacctggatcaaaactcatcagctgcttcactgtcaactcaaacgtta |
35476058 |
T |
|
| Q |
1046 |
t |
1046 |
Q |
| |
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| |
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|
| T |
35476057 |
t |
35476057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 334 - 588
Target Start/End: Complemental strand, 35476559 - 35476308
Alignment:
| Q |
334 |
taccttgagttgtgccaaggctaaaggagtttcagtgagaaatttgatggcaagagtcataattgtagaagtagtttcataaccagcaacgagcaaagcc |
433 |
Q |
| |
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|||||||||||||||||| |||| |||| ||| |||||||| |||| || | ||||| || ||||| || |||||||| || || ||||| || ||| |
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| T |
35476559 |
taccttgagttgtgccaatgctagaggatgttcggtgagaaacttgaccgcgaatgtcattatggtagaggtggtttcatatccggcgacgagtaatgcc |
35476460 |
T |
|
| Q |
434 |
aacataaaatcaactatttcctcgtttgagaactgttcaccagatgccaacaatgctccaagcatgtcattctttttctctatgcctatttcattctctt |
533 |
Q |
| |
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||||| ||||| ||||||| || || || || || || ||||||||||||||||| || ||||||||| | ||| |||| || ||| || | |||| |
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| T |
35476459 |
aacatgaaatcgactatttgttcattggaaaagtggtcgccagatgccaacaatgcacctagcatgtcagtttttgtctc---ccccattacactttctt |
35476363 |
T |
|
| Q |
534 |
ttctcctctgcctcactactagtgtcagtgcctctgccacctttgttcttgccta |
588 |
Q |
| |
|
|||| ||||||||||| | | ||||| ||||||||| ||||| ||||||||||| |
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|
| T |
35476362 |
ttcttctctgcctcacaatcaatgtcaatgcctctgctaccttcgttcttgccta |
35476308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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