View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4651-Insertion-10 (Length: 201)

Name: NF4651-Insertion-10
Description: NF4651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4651-Insertion-10
NF4651-Insertion-10
[»] chr2 (3 HSPs)
chr2 (8-201)||(18914357-18914550)
chr2 (23-201)||(18909609-18909790)
chr2 (8-201)||(18921505-18921701)
[»] scaffold0464 (1 HSPs)
scaffold0464 (22-201)||(7116-7298)
[»] chr3 (2 HSPs)
chr3 (22-195)||(12735638-12735814)
chr3 (67-167)||(32579711-32579811)
[»] chr7 (7 HSPs)
chr7 (72-201)||(19879664-19879793)
chr7 (65-201)||(19778721-19778860)
chr7 (88-185)||(19721196-19721293)
chr7 (67-170)||(19888557-19888660)
chr7 (105-196)||(19357087-19357181)
chr7 (105-194)||(19351819-19351911)
chr7 (64-195)||(22027812-22027943)
[»] chr6 (1 HSPs)
chr6 (67-170)||(14748518-14748621)
[»] chr4 (1 HSPs)
chr4 (90-185)||(2910180-2910275)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 18914550 - 18914357
Alignment:
Q  8 gaattcccctatagcaaagtctccgcattcaaacaactgcgttccaacgtcgctgttaatccttcttgatgaatttatcgcagaaatcctttctcgactt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  18914550 gaattcccctatagcaaagtctccgcattcaaacaactgcgttccaacgtcgctgttaatccttcttgatgaacttattgcagaaatcctttctcgactt 18914451  T
Q  108 cctgtcaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttctcatccttccttcgtcaaattgcaccttcatcgat 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18914450 cctgtcaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttctcatccttccttcgtcaaattgcaccttcatcgat 18914357  T

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Target: chr2; HSP #2
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 23 - 201
Target Start/End: Complemental strand, 18909790 - 18909609
Alignment:
Q  23 aaagtctccgcattcaaacaactgcgttc---caacgtcgctgttaatccttcttgatgaatttatcgcagaaatcctttctcgacttcctgtcaaaact 119  Q
    |||||||||||||||||||| | |||||    |||| |||||||||||||||||||| ||| | ||||||||||||||||| ||||||||||||||||||    
T  18909790 aaagtctccgcattcaaacagcggcgttgtttcaacatcgctgttaatccttcttgacgaactcatcgcagaaatcctttcacgacttcctgtcaaaact 18909691  T
Q  120 ctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttctcatccttccttcgtcaaattgcaccttcatcgat 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||    
T  18909690 ctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttctcatcctttcttcgccaaattgcaccttcaccgat 18909609  T

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Target: chr2; HSP #3
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 18921701 - 18921505
Alignment:
Q  8 gaattcccctatagcaaagtctccgcattcaaacaactgcgtt---ccaacgtcgctgttaatccttcttgatgaatttatcgcagaaatcctttctcga 104  Q
    ||||||||||  |||||||||||| |||  ||||| | |||||   ||| |||||||||||||||||||||||||  | ||||||||||||||||| ||     
T  18921701 gaattcccctccagcaaagtctccacatagaaacagcggcgttgttccagcgtcgctgttaatccttcttgatgagctcatcgcagaaatcctttcacgt 18921602  T
Q  105 cttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttctcatccttccttcgtcaaattgcaccttcatcgat 201  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18921601 cttccagtaaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttctcatccttccttcgtcaaaatgcaccttcatcgat 18921505  T

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Target: scaffold0464 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 22 - 201
Target Start/End: Original strand, 7116 - 7298
Alignment:
Q  22 caaagtctccgcattcaaacaactgcgttccaacgtcgctgttaatccttcttgatgaatttatcgcagaaatcctttctcgacttcctgtcaaaactct 121  Q
    ||||||||||||  ||||||  ||||| | ||||||||||| || |||||||||| ||| |||||| |||||| ||||| ||||||||||||||||||||    
T  7116 caaagtctccgccatcaaactgctgcgctacaacgtcgctgatagtccttcttgacgaacttatcgtagaaattctttcacgacttcctgtcaaaactct 7215  T
Q  122 gatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttctc---atccttccttcgtcaaattgcaccttcatcgat 201  Q
    ||||||| | ||||| || |||||||||| |||||||||||| ||||   ||||||||||||  ||| |||||||||| ||||    
T  7216 gatgcaattcaaatgtgtctgcaaatcatggaaaaccctaatctctcatgatccttccttcgctaaactgcaccttcagcgat 7298  T

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Target: chr3 (Bit Score: 75; Significance: 9e-35; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 22 - 195
Target Start/End: Complemental strand, 12735814 - 12735638
Alignment:
Q  22 caaagtctccgcattcaaacaactgcgttccaacgtcgctgttaatccttcttgatgaatttatcgcagaaatcctttctcgacttcctgtcaaaactct 121  Q
    |||||||||||| |||| ||  ||||| | |||| |||||| || |||||||||||||| |||||| |||||| ||||| |||||||||||||||||| |    
T  12735814 caaagtctccgccttcatactgctgcgctacaacctcgctgatagtccttcttgatgaacttatcgtagaaattctttcacgacttcctgtcaaaacttt 12735715  T
Q  122 gatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttctc---atccttccttcgtcaaattgcaccttc 195  Q
    ||||||| | ||||| ||||||||||||| |||||||||||| ||||   ||||||||||||  ||| |||||||||    
T  12735714 gatgcaattcaaatgtgtttgcaaatcatggaaaaccctaatctctcatgatccttccttcgctaaactgcaccttc 12735638  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 67 - 167
Target Start/End: Complemental strand, 32579811 - 32579711
Alignment:
Q  67 tccttcttgatgaatttatcgcagaaatcctttctcgacttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttc 166  Q
    |||| ||||||||| | ||||  |||||||| || || ||||||||||||||||| |||||| | ||||| ||||||||||||| |||||||||||||||    
T  32579811 tcctccttgatgaactcatcgtggaaatcctatcacgccttcctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcatggaaaaccctaatttc 32579712  T
Q  167 t 167  Q
    |    
T  32579711 t 32579711  T

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Target: chr7 (Bit Score: 66; Significance: 2e-29; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 72 - 201
Target Start/End: Complemental strand, 19879793 - 19879664
Alignment:
Q  72 cttgatgaatttatcgcagaaatcctttctcgacttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttctcatc 171  Q
    ||||||||| | ||| |||| |||||||| |||||||||||||||||||| |||||| | ||||| ||||||||||| | |||||||||||||||| |||    
T  19879793 cttgatgaactcatcacagacatcctttcacgacttcctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcttggaaaaccctaatttctaatc 19879694  T
Q  172 cttccttcgtcaaattgcaccttcatcgat 201  Q
    || |||| | ||||||||| ||||||||||    
T  19879693 ctgccttagccaaattgcatcttcatcgat 19879664  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 65 - 201
Target Start/End: Original strand, 19778721 - 19778860
Alignment:
Q  65 aatccttcttgatgaatttatcgcagaaatcctttctcgacttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatt 164  Q
    |||||| ||||||||| | ||| |||| ||||| || |||||||||||||||||||| |||||| | ||||| ||||||||||| | |||||||||||||    
T  19778721 aatcctccttgatgaactcatcacagacatcctgtcacgacttcctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcttggaaaaccctaatt 19778820  T
Q  165 tctc---atccttccttcgtcaaattgcaccttcatcgat 201  Q
    ||||   |||||||||||| |||| |||| ||||| ||||    
T  19778821 tctcatgatccttccttcgccaaactgcatcttcagcgat 19778860  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 88 - 185
Target Start/End: Original strand, 19721196 - 19721293
Alignment:
Q  88 cagaaatcctttctcgacttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttctcatccttccttcgtcaaa 185  Q
    |||||||||| || || |||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||| ||| ||||  |||||| ||||    
T  19721196 cagaaatcctatcacgccttcctttcaaaactctgatgcaaatgaaatgtgtctgcaaatcattgaaaaccctaatctctgatcccgccttcgccaaa 19721293  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 67 - 170
Target Start/End: Complemental strand, 19888660 - 19888557
Alignment:
Q  67 tccttcttgatgaatttatcgcagaaatcctttctcgacttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttc 166  Q
    |||| ||||||||| | ||||  || ||||| || |||||||||||||||||||| |||||| | ||||| ||||||||||||| |||||||||||||||    
T  19888660 tcctccttgatgaactcatcgtggatatcctgtcacgacttcctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcatggaaaaccctaatttc 19888561  T
Q  167 tcat 170  Q
    ||||    
T  19888560 tcat 19888557  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 105 - 196
Target Start/End: Original strand, 19357087 - 19357181
Alignment:
Q  105 cttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttctc---atccttccttcgtcaaattgcaccttca 196  Q
    ||||| |||||||||||||||||| | ||||||||||||||||||| ||||||||| |||||||   || ||||||||  |||||||||||||||    
T  19357087 cttcccgtcaaaactctgatgcaattcaaatgcgtttgcaaatcatggaaaacccttatttctcatgattcttccttcaccaaattgcaccttca 19357181  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 194
Target Start/End: Complemental strand, 19351911 - 19351819
Alignment:
Q  105 cttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttctc---atccttccttcgtcaaattgcacctt 194  Q
    ||||||||||||||||| |||||| | ||||| ||||| ||||||| || |||||| |||||||   |||||||||||  |||||||||||||    
T  19351911 cttcctgtcaaaactcttatgcaattcaaatgtgtttgtaaatcatggacaaccctgatttctcatgatccttccttcaccaaattgcacctt 19351819  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 64 - 195
Target Start/End: Original strand, 22027812 - 22027943
Alignment:
Q  64 taatccttcttgatgaatttatcgcagaaatcctttctcgacttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaat 163  Q
    ||||||||| ||| ||| ||||| ||||| | ||||||   ||||| |||||| ||||||| | | | || |||  ||| || |||| | |||||||| |    
T  22027812 taatccttcctgacgaacttatcacagaactgctttcttttcttcccgtcaaatctctgatccgattcaagtgctgttgtaagtcatgggaaaccctatt 22027911  T
Q  164 ttctcatccttccttcgtcaaattgcaccttc 195  Q
    |||| | |||||||||||||||||||||||||    
T  22027912 ttctgacccttccttcgtcaaattgcaccttc 22027943  T

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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 67 - 170
Target Start/End: Original strand, 14748518 - 14748621
Alignment:
Q  67 tccttcttgatgaatttatcgcagaaatcctttctcgacttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttc 166  Q
    |||| ||||||||| ||||||  ||| || | || ||||| |||||||||||||| |||||| | ||||| ||||||||||||| |||||||||||||||    
T  14748518 tcctccttgatgaacttatcgtggaattcttgtcacgactccctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcatggaaaaccctaatttc 14748617  T
Q  167 tcat 170  Q
    ||||    
T  14748618 tcat 14748621  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 90 - 185
Target Start/End: Original strand, 2910180 - 2910275
Alignment:
Q  90 gaaatcctttctcgacttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttctcatccttccttcgtcaaa 185  Q
    |||||||| || || ||||| |||||| |||| || || ||||||| ||| || || |||| ||||||||||||||| |||||||| ||| |||||    
T  2910180 gaaatcctatcccgccttccagtcaaatctctaattcagatgaaatccgtatgtaagtcatggaaaaccctaatttcgcatccttcattcatcaaa 2910275  T

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