View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4651-Insertion-3 (Length: 625)
Name: NF4651-Insertion-3
Description: NF4651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4651-Insertion-3 |
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Alignment Details
Target: chr6 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 533 - 624
Target Start/End: Complemental strand, 11845362 - 11845271
Alignment:
| Q |
533 |
ggttttcgtttcactttctctgtaaaactcttccttatcgctcttctagatccaggtttcaacttcttcattctttgtcttaattcctcttt |
624 |
Q |
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| T |
11845362 |
ggttttcgtttcactttctctgtaaaactcttccttatcgctcttctagatccaggtttcatcttcttcattctttgtcttaattcctcttt |
11845271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 8e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 270 - 504
Target Start/End: Complemental strand, 24522805 - 24522575
Alignment:
| Q |
270 |
tttttcgattgattgaattctgaatatatgaattttgtgtaaattccaattgtacccacatttacgtgaaggtgaacaccaatatatt--attcaagcca |
367 |
Q |
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| T |
24522805 |
tttttcgatagattgaattgtgtatatatgaactttgtgtgaattccaattgtacctacat------gaacgtgaataccaatatatatgatttaagcca |
24522712 |
T |
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| Q |
368 |
atccttttgt-tttggttttgttggattatgtcctttgtaattctaggagcaacatacatataattatccactaagtataattcttgaatcagagcattt |
466 |
Q |
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| T |
24522711 |
atctttttgtgttttgttttgctggattgtgttctttgtaattctatgagtaacatacatataattatccgacaagtataattcttgaatcagagc-ctt |
24522613 |
T |
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| Q |
467 |
tttcaagtcgtgggttttctatgaaaatcatataattt |
504 |
Q |
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| T |
24522612 |
actcaggccgtgtgttttatatgaaaatcataaaattt |
24522575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 270 - 434
Target Start/End: Complemental strand, 42570548 - 42570387
Alignment:
| Q |
270 |
tttttcgattgattgaattctgaatatatgaattttgtgtaaattccaattgtacccacatttacgtgaaggtgaacaccaatatatt--attcaagcca |
367 |
Q |
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| T |
42570548 |
tttttcgatagattgaattgtgtatatatgaactttgtgtgaattccaattgtacctacat------gaacgtgaataccaatatatatgatttaagcca |
42570455 |
T |
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| Q |
368 |
atccttttgt-tttggttttgttggattatgtcctttgtaattctaggagcaacatacatataattat |
434 |
Q |
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| T |
42570454 |
atctttttgtgttttgttttgttggattgtgttctttgtaattctatgagtaacatacatataattat |
42570387 |
T |
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