View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4651-Insertion-5 (Length: 576)
Name: NF4651-Insertion-5
Description: NF4651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4651-Insertion-5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 8 - 576
Target Start/End: Original strand, 52392599 - 52393159
Alignment:
| Q |
8 |
ggaccaagagcaactgggcgtttcttaatgaacctccagtgatggaagctcctaccagcaagtatgtatcgcagtatcacgtagccaacttgggatcatc |
107 |
Q |
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| T |
52392599 |
ggaccaagagcaactgggcgtttcttaatgaacctccagtgatggaagctcctaccagcaagtatgcatcgcagtatcacgtagccaacttgggatcatc |
52392698 |
T |
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| Q |
108 |
aaaattaaacacaggacatggaattagtgcttgatctgaatgatctatctaaatctaattccaccctttacataaatgtaacatatccatgaatgtaatt |
207 |
Q |
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| T |
52392699 |
aaaattaaacacaggacatggaattagtgcttgatctgaatgatctatctaaatctaattccaccctttacataaatgtaacatatccatgaatgtaatt |
52392798 |
T |
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| Q |
208 |
tcnnnnnnnnnnnnnnnnaaggtgacacgaatgtaattgttggtttggttggtatatgggcgctaattttattttgccacttataattctgcattgaata |
307 |
Q |
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| T |
52392799 |
tcttttttgttttgttttcaggtgacccgaatgtaattg-----ttggttggtatatgggcgctaattttattttgccacttataattctgcattgaata |
52392893 |
T |
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| Q |
308 |
atgttaatttatccataaggttttggtatttatttttctatatttactcaacacatataagggaaatgtctgtaccaannnnnnnnnnnnnnnnngggga |
407 |
Q |
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| T |
52392894 |
atgttaatttatccataaggttttggtatttatttttctatatttactcaacacatataagggaaatgtctgtaccaa---aaaaataataataaggaga |
52392990 |
T |
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| Q |
408 |
acggattctaagatgtattgtaaatataggaaattcagtattaaatttaattaacataacaaaaattgttttttccttttcctaaacaaaggatcgtgtt |
507 |
Q |
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| T |
52392991 |
acggattctaagatgtattgtaaatataggaaattcagtattaaatttaattaacataacaaaaattgttttttccttttcctaaacaaaggatcgtgtt |
52393090 |
T |
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| Q |
508 |
ttctggatttttctagtcatgtgctacggtttgggcttttgtcttctgctttgttgtgagttgtttttg |
576 |
Q |
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| T |
52393091 |
ttctggatttttctagtcatgtgctacggtttgggcttttgtctgctgctttgttgtgagttgtttttg |
52393159 |
T |
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