View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4651-Insertion-8 (Length: 394)
Name: NF4651-Insertion-8
Description: NF4651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4651-Insertion-8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 8 - 384
Target Start/End: Original strand, 38728351 - 38728727
Alignment:
| Q |
8 |
tttcccccactttttatcattatgttataaaccaatatcaaattaattgttcatgttaaaggttggaatatattattgacaaatattttatctaattaag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38728351 |
tttcccccactttttatcattatgttataaaccaatatcaaattaattgttcatgttaaaggttggaatatattattgacaaatattttatctaattaag |
38728450 |
T |
|
| Q |
108 |
ttacaattaatgagtgactgaatcaatacctgaacttgatagggtggtcttttgctatggttttggatctctcagagattgaattaggattggtgtgaag |
207 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38728451 |
ttacaattaatgagtgacggaatcaatacctgaacttgatagggtgatcttttgcaatggttttggatctctcagagattgaattaggattggtgtgaag |
38728550 |
T |
|
| Q |
208 |
gagaagatattcaaggtcacctttatcaccattgggaccaatatttttgcagccataaccaaaaggagtagaagtaccagcttgaagtttctctgaagag |
307 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38728551 |
gagaagatactcaaggtcacctttatcaccattgggaccaatatttttgcagccataaccaaaaggagtagaagtaccagcttgaagtttctctgtagag |
38728650 |
T |
|
| Q |
308 |
ttttttgagaaaaactctgttccttcattttccaaccttgaaataacctcctttggtataccatgattcaccacctt |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38728651 |
ttttttgagaaaaactctgttccttcattttccaaccttgaaataacctcctttggtataccatgattcaccacctt |
38728727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University