View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4651-Insertion-9 (Length: 246)
Name: NF4651-Insertion-9
Description: NF4651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4651-Insertion-9 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 8 - 246
Target Start/End: Complemental strand, 7036116 - 7035872
Alignment:
| Q |
8 |
ctcagctcaaactagttgtgcaacccaaccaactccacacccaaaataaaataaaataa-----tatggtgttcaagtgagattttctggatgatacat- |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7036116 |
ctcagctcaaactagttgtgcaacccaaccaactccacacccaaaataaaataaaataaaataatatggtgttcaagtgagattttctggatgatacatt |
7036017 |
T |
|
| Q |
102 |
gacaattctnnnnnnnnnnnnnntggctttaggtgatttgctcaccagttggtttatatacattaaaatgggctgtagtgtcgcatattatttcatctgg |
201 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7036016 |
gacaattctgaaaaagaaaaaaatggctttaggtgatttgctcaccagttggtttatatacattaaaatgggctgtagtgtcacatattatttcatctgg |
7035917 |
T |
|
| Q |
202 |
agggaactgtattattttaagcgtctttcatgggaaagatttgta |
246 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
7035916 |
agggaactgtattattttaagtgtctttcatgggaaagatctgta |
7035872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 8 - 246
Target Start/End: Complemental strand, 7897346 - 7897112
Alignment:
| Q |
8 |
ctcagctcaaactagttgtgcaacccaaccaactccacacccaaaataaaataaaataatatggtgttcaagtgagattttctggatgatacat-gacaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
7897346 |
ctcagctcaaactagttgtgcaacccaaccaactccacacccaaaataaaataa-----tatggtgttcgagtgagattttctggatgatacattgacaa |
7897252 |
T |
|
| Q |
107 |
ttctnnnnnnnnnnnnnntggctttaggtgatttgctcaccagttggtttatatacattaaaatgggctgtagtgtcgcatattatttcatctggaggga |
206 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7897251 |
ttctaaaaaagaaaaaaatggctttaggtgatttgctcaccagttggtttatatacattaaaatgggctgtagtgtcgcatattatttcatctggaggga |
7897152 |
T |
|
| Q |
207 |
actgtattattttaagcgtctttcatgggaaagatttgta |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7897151 |
actgtattattttaagcgtctttcatgggaaagatgtgta |
7897112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 29380425 - 29380357
Alignment:
| Q |
130 |
ttaggtgatttgctcaccagttggtttatatacattaaaatgggctgtagtgtcgcatattatttcatc |
198 |
Q |
| |
|
||||||| |||||| |||||||||||||| |||||||| || | ||||||||| |||||||||||||| |
|
|
| T |
29380425 |
ttaggtggtttgctaaccagttggtttatgtacattaagatagactgtagtgtaacatattatttcatc |
29380357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University