View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4651_high_1 (Length: 710)

Name: NF4651_high_1
Description: NF4651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4651_high_1
NF4651_high_1
[»] chr1 (1 HSPs)
chr1 (1-700)||(32189463-32190162)


Alignment Details
Target: chr1 (Bit Score: 692; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 692; E-Value: 0
Query Start/End: Original strand, 1 - 700
Target Start/End: Complemental strand, 32190162 - 32189463
Alignment:
Q  1 cactgctttatcaagtaacattttcctcgtctcatcgtcaacataactttctctacgaaaatactcatcgaattcaggaacaccgatggcttttcttatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32190162 cactgctttatcaagtaacattttcctcgtctcatcgtcaacataactttctctacgaaaatactcatcgaattcaggaacaccgatggcttttcttatc 32190063  T
Q  101 ccttttgagtaatccccgttcggattataaaagggtcgcaactcattaaccattccactgtttaacatttgatcaacacgttggtctatgtaggaacgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32190062 ccttttgagtaatccccgttcggattataaaagggtcgcaactcattaaccattccactgtttaacatttgatcaacacgttggtctatgtaggaacgaa 32189963  T
Q  201 gaataggcatggaaacatcgacccaaaggcaacaaaaattgtacctcgatcgaaaattgtaatcatcatcgtcaaccaaggcttcaaggtaggaattaga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32189962 gaataggcatggaaacatcgacccaaaggcaacaaaaattgtacctcgatcgaaaattgtaatcatcatcgtcaactaaggcttcaaggtaggaattaga 32189863  T
Q  301 gccaccaacgatgatcggaagatttccaccgctcatgattaaatcaatcactgaagttgatttttcgcgaaaatcattggatgtgaactctatgttgggg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32189862 gccaccaacgatgatcggaagatttccaccgctcatgattaaatcaatcgctgaagttgatttttcgcgaaaatcattggatgtgaactctatgttgggg 32189763  T
Q  401 ttatgtgttcctaataaatggtgtggtattcctttttgttcttctagagtgattttgtttgttactatgtccaaaccttcgtagatttgaattttgtctg 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32189762 ttatgtgttcctaataaatggtgtggtattcctttttgttcttctagagtgattttgtttgttactatgtccaaaccttcgtagatttgaattttgtctg 32189663  T
Q  501 agttgatgatttctgacgggaaataattggctaagtcaattgaaagctttgactttcctgttcctgttgcgcccatcaccaacactacattttctttttg 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32189662 agttgatgatttctgacgggaaataattggctaagtcaattgaaagctttgactttcctgttcctgttgcgcccatcaccaacactacattttctttttg 32189563  T
Q  601 aatttgtctcatattcagttttttgccactgcattgaacattgcttgttaagggttgtctaattagtctgcacatggacaatgagatgctcatgatgatg 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32189562 aatttgtctcatattcagttttttgccactgcattgaacattgcttgttaagggttgtctaattagtctgcacatggacaatgagatgctcatgatgatg 32189463  T

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