View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4651_high_3 (Length: 462)

Name: NF4651_high_3
Description: NF4651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4651_high_3
NF4651_high_3
[»] chr7 (8 HSPs)
chr7 (169-341)||(25642394-25642566)
chr7 (220-371)||(25492565-25492716)
chr7 (220-341)||(25500974-25501095)
chr7 (219-334)||(25473837-25473952)
chr7 (269-346)||(25431227-25431304)
chr7 (219-312)||(25449969-25450062)
chr7 (273-334)||(25429195-25429256)
chr7 (19-66)||(31667309-31667356)
[»] chr4 (1 HSPs)
chr4 (42-117)||(52739914-52739989)
[»] chr5 (1 HSPs)
chr5 (224-332)||(495151-495259)
[»] chr6 (1 HSPs)
chr6 (19-66)||(14451696-14451743)


Alignment Details
Target: chr7 (Bit Score: 113; Significance: 5e-57; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 169 - 341
Target Start/End: Complemental strand, 25642566 - 25642394
Alignment:
Q  169 tctatgtctttattggttagcatgaacaaaccccattccttatcgacttccagtaaaaaggccgagattaaatagatcggtttctttccccttggcactg 268  Q
    ||||||||||| || ||||||||  |||| ||||||||| |||| |||||||||||||||||| |||||||| ||||| ||||||||||||||||| |      
T  25642566 tctatgtctttctttgttagcatacacaagccccattccatatcaacttccagtaaaaaggccaagattaaagagatcagtttctttccccttggctcca 25642467  T
Q  269 tccttctcggcttcatcttcatcagaaacaaaccaattgtaagggaggttgattttaggctcaaagctactgc 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  25642466 tccttctcggcttcatcttcatcagaaacaaaccaattgtaagggagttggattttaggctcaaagctactgc 25642394  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 220 - 371
Target Start/End: Complemental strand, 25492716 - 25492565
Alignment:
Q  220 agtaaaaaggccgagattaaatagatcggtttctttccccttggcactgtccttctcggcttcatcttcatcagaaacaaaccaattgtaagggaggttg 319  Q
    ||||| |||||| |||||||| ||||| |||||||||||||||||    | | ||||| |||||||||||||| ||||| ||||||||||||| || | |    
T  25492716 agtaataaggccaagattaaagagatcagtttctttccccttggcttgtttcatctcgacttcatcttcatcacaaacataccaattgtaaggaagttgg 25492617  T
Q  320 attttaggctcaaagctactgcagctttgatttcctttcacaatctctaaag 371  Q
    ||||||||||||| ||||||||  ||||  |||  ||||||||||| |||||    
T  25492616 attttaggctcaatgctactgcttctttctttttgtttcacaatctgtaaag 25492565  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 220 - 341
Target Start/End: Complemental strand, 25501095 - 25500974
Alignment:
Q  220 agtaaaaaggccgagattaaatagatcggtttctttccccttggcactgtccttctcggcttcatcttcatcagaaacaaaccaattgtaagggaggttg 319  Q
    |||||||||||| |||||||| ||||  ||| |||||||||||||    | | ||||| |||||||||||||||||||| ||||||||||||| || | |    
T  25501095 agtaaaaaggccaagattaaagagattagttactttccccttggcttgtttcatctcgacttcatcttcatcagaaacataccaattgtaaggaagttgg 25500996  T
Q  320 attttaggctcaaagctactgc 341  Q
    ||||||||||||| ||||||||    
T  25500995 attttaggctcaatgctactgc 25500974  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 219 - 334
Target Start/End: Original strand, 25473837 - 25473952
Alignment:
Q  219 cagtaaaaaggccgagattaaatagatcggtttctttccccttggcactgtccttctcggcttcatcttcatcagaaacaaaccaattgtaagggaggtt 318  Q
    ||||||||||||| |||||||| |||||||||||||| |||||||  || || ||||||  |  |||||| | |||||| |||||||||||||| || |     
T  25473837 cagtaaaaaggccaagattaaagagatcggtttcttttcccttggttctatcattctcgattgaatcttcgttagaaactaaccaattgtaaggaagttg 25473936  T
Q  319 gattttaggctcaaag 334  Q
    |||||||| |||||||    
T  25473937 gattttagtctcaaag 25473952  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 346
Target Start/End: Original strand, 25431227 - 25431304
Alignment:
Q  269 tccttctcggcttcatcttcatcagaaacaaaccaattgtaagggaggttgattttaggctcaaagctactgcagctt 346  Q
    |||||||||||||||||||  |||||||| |||||||||||||| || | |||||| |||||||| ||||||| ||||    
T  25431227 tccttctcggcttcatctttgtcagaaactaaccaattgtaaggaagttggattttcggctcaaatctactgctgctt 25431304  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 312
Target Start/End: Complemental strand, 25450062 - 25449969
Alignment:
Q  219 cagtaaaaaggccgagattaaatagatcggtttctttccccttggcactgtccttctcggcttcatcttcatcagaaacaaaccaattgtaagg 312  Q
    |||| |||||||| |||||||| ||||| ||||| |||||||||||    || ||||||||||||||||| | |||||| ||||||||||||||    
T  25450062 cagttaaaaggccaagattaaagagatcagtttccttccccttggcttcatctttctcggcttcatcttctttagaaactaaccaattgtaagg 25449969  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 273 - 334
Target Start/End: Complemental strand, 25429256 - 25429195
Alignment:
Q  273 tctcggcttcatcttcatcagaaacaaaccaattgtaagggaggttgattttaggctcaaag 334  Q
    ||||| ||| ||||||||||||||| ||||||||||||||  | | ||||||||||||||||    
T  25429256 tctcgactttatcttcatcagaaactaaccaattgtaaggatgttagattttaggctcaaag 25429195  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 31667309 - 31667356
Alignment:
Q  19 aacaagtttataatcagtattagtgaaaaatcacggttatcatagagg 66  Q
    ||||||||||||||||  |||||||||||||||| |||| ||||||||    
T  31667309 aacaagtttataatcaaaattagtgaaaaatcactgttaacatagagg 31667356  T

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Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 52739914 - 52739989
Alignment:
Q  42 tgaaaaatcacggttatcatagaggttctattattctaatctaattaagaaactgatgaacaccaactgttctaac 117  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||    
T  52739914 tgaaaaataacggttatcatagaggttctattgttctaatctaattaagaaactaataaacaccaactgttctaac 52739989  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 224 - 332
Target Start/End: Original strand, 495151 - 495259
Alignment:
Q  224 aaaaggccgagattaaatagatcggtttctttccccttggcactgtccttctcggcttcatcttcatcagaaacaaaccaattgtaagggaggttgattt 323  Q
    |||||||| |||||||| |||| | ||||||| ||||||||    || |||||  |||||||||||||||||||  ||||||||||||| || |||||||    
T  495151 aaaaggcctagattaaagagattgatttcttttcccttggcttcttcattctcaacttcatcttcatcagaaactgaccaattgtaaggaagcttgattt 495250  T
Q  324 taggctcaa 332  Q
    |||||||||    
T  495251 taggctcaa 495259  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 14451696 - 14451743
Alignment:
Q  19 aacaagtttataatcagtattagtgaaaaatcacggttatcatagagg 66  Q
    ||||||||||||||||  |||||||||||||||| |||| ||||||||    
T  14451696 aacaagtttataatcaaaattagtgaaaaatcactgttaccatagagg 14451743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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