View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4651_high_4 (Length: 432)
Name: NF4651_high_4
Description: NF4651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4651_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 45791774 - 45792186
Alignment:
| Q |
1 |
gtcaaaaagcactgcctatttttgggttaacctagcatgaagaaagtaaaatctgacaccttggtgtataatttgttttatgtatacatgttattcttcc |
100 |
Q |
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| T |
45791774 |
gtcaaaaagcactgcctatttttgggttaacctagcatgaagaaagtaaaatctgacaccttggtgtataatttgttttatgtatacatgttattcttcc |
45791873 |
T |
|
| Q |
101 |
ttctgtgttttacttatctttt--gtcaataggtatttttgaaaactagcctttcacaattcagtttattctttgttgcaggaaatttcaaaattgaggt |
198 |
Q |
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| T |
45791874 |
ttctgtgttttacttattttttttgtcaataggtatttttgaaaactagcctttcacaattcagtttattttttgttgcaggaaatttcaaaattgaggt |
45791973 |
T |
|
| Q |
199 |
atgagttgtgtccactcgtcatgaaagagaggaagttttggagaatatattttatacttgtgaataatcatgttgcaccgtcagtagtttatactattgc |
298 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||| |
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| T |
45791974 |
atgagttgtgtccacatgtcatgaaagagaggaagttttggagaatatattttatacttgtgaataatcatatcgcaccgtaagtagtttatactattgc |
45792073 |
T |
|
| Q |
299 |
ttgagtattttggttttcgcataaattttgttatttgacatttgtctgaccaagataaatccaatacaaggactatttggtctttgaagtctgagaaatc |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45792074 |
ttgagtattttggttttcgcataaattttgttatttgacatttgtctgaccaagataaatccaatacaaggactatttggtctttgaagtctgagaaatc |
45792173 |
T |
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| Q |
399 |
tatacaatcctga |
411 |
Q |
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| T |
45792174 |
tatacaatcctga |
45792186 |
T |
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