View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4651_high_7 (Length: 246)
Name: NF4651_high_7
Description: NF4651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4651_high_7 |
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| [»] scaffold0070 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 25385437 - 25385217
Alignment:
| Q |
1 |
gtgtcaaaagtacaaaaatatattatatatcatgcattgttgttgctgcctttgtctctgacannnnnnnnacaaaaattcacaaagaaatgtacaaaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
25385437 |
gtgtcaaaagtacaaaaatatattatatatcatgcattgttgttgctgcctttgtctctgaaattttttttacaaaaattcacaaagaaa---------- |
25385348 |
T |
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| Q |
101 |
aaaactaaatttcaaatgcttggtggtccattcacctttggatgattctggtttttgcataattactgatttttcagttttggctgataatttatcttaa |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||| |
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| T |
25385347 |
--aactaaatttcaaatgcatggtggtccattcacctttggatgattctggtttttgcataattactgattttacagttttggctaagaatttatcttaa |
25385250 |
T |
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| Q |
201 |
aatctgtttgatgagacaagaacagtataagtt |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
25385249 |
aatctgtttgatgagacaagaacagtataagtt |
25385217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 94 - 233
Target Start/End: Complemental strand, 25489227 - 25489088
Alignment:
| Q |
94 |
acaaagaaaaactaaatttcaaatgcttggtggtccattcacctttggatgattctggtttttgcataattactgatttttcagttttggctgataattt |
193 |
Q |
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||||| ||||| |||||||||||||| || ||||||||||||||||||| |||||| |||| | ||||||| ||| |||||||||||||||||| ||||| |
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| T |
25489227 |
acaaataaaaagtaaatttcaaatgcatgttggtccattcacctttggacgattctagtttctacataattgctggtttttcagttttggctgagaattt |
25489128 |
T |
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| Q |
194 |
atcttaaaatctgtttgatgagacaagaacagtataagtt |
233 |
Q |
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| T |
25489127 |
atcttaaaatctgtttgatgagacaagaacagtataagtt |
25489088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 72 - 164
Target Start/End: Complemental strand, 25321448 - 25321357
Alignment:
| Q |
72 |
acaaaaattcacaaagaaatgtacaaagaaaaactaaatttcaaatgcttggtggtccattcacctttggatgattctggtttttgcataatt |
164 |
Q |
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| T |
25321448 |
acaaaaattcactaataaatgtacaaataaaaactaaatttcaaatgcatgttggtccattcacctttggatgattctag-ttttgcataatt |
25321357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 219
Target Start/End: Complemental strand, 25799547 - 25799465
Alignment:
| Q |
137 |
tttggatgattctggtttttgcataattactgatttttcagttttggctgataatttatcttaaaatctgtttgatgagacaa |
219 |
Q |
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| T |
25799547 |
tttggatgattctagtttctgcataattgctgatttttcagtttttgctgagaatgtatcttaaaatcagttagatgagacaa |
25799465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 233
Target Start/End: Complemental strand, 25603271 - 25603162
Alignment:
| Q |
124 |
tggtccattcacctttggatgattctggtttttgcataattactgatttttcagttttggctgataatttatcttaaaatctgtttgatgagacaagaac |
223 |
Q |
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||||||||||||| ||||| ||||| |||| ||||||||| | | |||||||||||||| ||| |||| |||||||||| ||||||||| ||||||| |
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| T |
25603271 |
tggtccattcaccattggactattctagtttctgcataattgcaggtttttcagttttggttgagaattcatcttaaaattggtttgatgaaacaagaat |
25603172 |
T |
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| Q |
224 |
agtataagtt |
233 |
Q |
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| T |
25603171 |
tgtataagtt |
25603162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 18366 - 18539
Alignment:
| Q |
1 |
gtgtcaaaagtacaaaaatatattatatatcatgcattgttgttgctgcctttgtctctgacannnnnnnnacaaaaattcacaaagaaatgtacaaaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||| |
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| T |
18366 |
gtgtcaaaagtacaaaaatatattatatatcatgcattgttgttgctgcctttgtcactgacatcttttt-acaaaaattcacaaggaaatgtacaaaga |
18464 |
T |
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| Q |
101 |
aaaactaaatttcaaatgcttggtggtccattcacctttggatgattctggtttttgcataattactgatttttca |
176 |
Q |
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||||||||||||||||||| || |||||||||||||||||||||||| | | |||||||||||| ||||||||||| |
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| T |
18465 |
aaaactaaatttcaaatgcatgttggtccattcacctttggatgattttag-ttttgcataattgctgatttttca |
18539 |
T |
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