View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4651_high_8 (Length: 244)
Name: NF4651_high_8
Description: NF4651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4651_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 37834694 - 37834516
Alignment:
| Q |
1 |
gagagtcgagtttctcagttaaggtagcttaccatttgttaggattcctagtttcctactcaggaaaatcttagtaaaagaggggtgaacctgaactctt |
100 |
Q |
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| T |
37834694 |
gagagtcgagtttctcagttaaggtagcttaccatttgttaggattcctagtttcctactgaggaaaatcttagtaaaagaggggtgaacctgaactctt |
37834595 |
T |
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| Q |
101 |
cttctctatgtgttggtggattgtggcagagttgaaacaaaaaatcatatattttttggttgtccaattttatctgttg |
179 |
Q |
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| T |
37834594 |
cttctctatgtgttggtggattgtggcagagttgaaacaaaaaatcatatattttttggtcgtccaattttatctgttg |
37834516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 37834478 - 37834427
Alignment:
| Q |
175 |
tgttggagtctagtcccgtctgattgtgcacaggggtctggttctggttctg |
226 |
Q |
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| T |
37834478 |
tgttggagtctagtcctgtctgattgtgcacaggggtctggttctggctctg |
37834427 |
T |
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