View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4651_low_10 (Length: 238)

Name: NF4651_low_10
Description: NF4651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4651_low_10
NF4651_low_10
[»] chr4 (6 HSPs)
chr4 (16-238)||(38073326-38073548)
chr4 (42-238)||(38058992-38059188)
chr4 (49-214)||(38082432-38082597)
chr4 (36-214)||(38086860-38087038)
chr4 (28-238)||(38061252-38061462)
chr4 (43-110)||(38078144-38078211)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 38073548 - 38073326
Alignment:
Q  16 cactgcatactgaattttgtataaggttccatatctatgtggaaatggaatttcagattctgaaatcttatccattatggcaccataaggaaacaatacc 115  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38073548 cactgcatattgaattttgtataaggttccatatctatgtggaaatggaatttcagattctgaaatcttatccattatgccaccataaggaaacaatacc 38073449  T
Q  116 attagtacatcttccgcaccatcttcatcaaacaaaggccataatccttctaaaccagtttcaggaataggaattttgacaaaatcagatttcgctttgg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38073448 attagtacatcttccgcaccatcttcatcaaacaaaggccataatccttctaaaccagtttcaggaataggaattttgacaaaatcagatttcgctttgg 38073349  T
Q  216 aattatcctttgcagctagtgtt 238  Q
    |||||||||||||||||||||||    
T  38073348 aattatcctttgcagctagtgtt 38073326  T

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Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 42 - 238
Target Start/End: Complemental strand, 38059188 - 38058992
Alignment:
Q  42 ttccatatctatgtggaaatggaatttcagattctgaaatcttatccattatggcaccataaggaaacaataccattagtacatcttccgcaccatcttc 141  Q
    |||||| ||| |||||||||||||||||||| |||||||| |||||||||||| |||||||||||||  ||| ||  |   ||||||  |||||||||||    
T  38059188 ttccatgtctgtgtggaaatggaatttcagactctgaaatattatccattatgccaccataaggaaaacatatcaccatggcatctttggcaccatcttc 38059089  T
Q  142 atcaaacaaaggccataatccttctaaaccagtttcaggaataggaattttgacaaaatcagatttcgctttggaattatcctttgcagctagtgtt 238  Q
    || ||||| |||||||| ||||||||| |||  ||||||||| |||||||||||||||||||||||  ||||| || ||||||||||||| ||||||    
T  38059088 atgaaacataggccatattccttctaatccaacttcaggaatgggaattttgacaaaatcagattttactttgtaaatatcctttgcagcaagtgtt 38058992  T

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Target: chr4; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 49 - 214
Target Start/End: Complemental strand, 38082597 - 38082432
Alignment:
Q  49 tctatgtggaaatggaatttcagattctgaaatcttatccattatggcaccataaggaaacaataccattagtacatcttccgcaccatcttcatcaaac 148  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||  |||||||||||||| ||| ||| | | || |||  ||||| ||||||| ||||    
T  38082597 tctatgtggaaatggaatttcagactctgaaatagtatccattattccaccataaggaaaccatatcatcattgcacctttggcaccttcttcatgaaac 38082498  T
Q  149 aaaggccataatccttctaaaccagtttcaggaataggaattttgacaaaatcagatttcgctttg 214  Q
    |||| ||||| ||||||||| ||| |||||||||| ||| |||| |||||||||||||| ||||||    
T  38082497 aaagaccatattccttctaatccattttcaggaatgggagttttcacaaaatcagattttgctttg 38082432  T

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Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 36 - 214
Target Start/End: Complemental strand, 38087038 - 38086860
Alignment:
Q  36 ataaggttccatatctatgtggaaatggaatttcagattctgaaatcttatccattatggcaccataaggaaacaataccattagtacatcttccgcacc 135  Q
    ||||| |||||  |||||| ||||||||||||||||| ||||||||  |||||||| || ||||||| |||||| ||| ||| | | ||||||  | |||    
T  38087038 ataagtttccacttctatgaggaaatggaatttcagactctgaaatagtatccattttgccaccatatggaaaccatatcatcattgcatctttggaacc 38086939  T
Q  136 atcttcatcaaacaaaggccataatccttctaaaccagtttcaggaataggaattttgacaaaatcagatttcgctttg 214  Q
     ||||||||||| ||||||||||  |||||||| |||||||||||||| |||||| | |||||||||||||| ||||||    
T  38086938 ctcttcatcaaataaaggccatatgccttctaatccagtttcaggaattggaattctcacaaaatcagattttgctttg 38086860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 238
Target Start/End: Original strand, 38061252 - 38061462
Alignment:
Q  28 aattttgtataaggttccatatctatgtggaaatggaatttcagattctgaaatcttatccattatggcaccataaggaaacaataccattagtacatct 127  Q
    ||||| ||||||  ||||||||||||||||||||||||||| ||| |||||||| |||| ||||||| ||||||||||||| ||   ||  | |  ||||    
T  38061252 aatttggtataaatttccatatctatgtggaaatggaattttagactctgaaatattattcattatgccaccataaggaaaaaaatacaccattgaatct 38061351  T
Q  128 tccgcaccatcttcatcaaacaaaggccataatccttctaaaccagtttcaggaataggaattttgacaaaatcagatttcgctttggaattatcctttg 227  Q
    |  ||||||||||||| ||||| | |||| | || |||||| ||| |||||| ||| |||||| | ||||||||||| ||  ||||| || |||||||||    
T  38061352 ttggcaccatcttcatgaaacatacgccacattctttctaatccaatttcagaaatgggaattctcacaaaatcagactttactttgaaaatatcctttg 38061451  T
Q  228 cagctagtgtt 238  Q
    ||||| |||||    
T  38061452 cagcttgtgtt 38061462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 38078211 - 38078144
Alignment:
Q  43 tccatatctatgtggaaatggaatttcagattctgaaatcttatccattatggcaccataaggaaaca 110  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||    
T  38078211 tccatatctatgtggaaatggaatttcaaattctgaaatattatccattatgccaccataaggaaaca 38078144  T

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