View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4651_low_11 (Length: 225)
Name: NF4651_low_11
Description: NF4651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4651_low_11 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 7036112 - 7036330
Alignment:
| Q |
7 |
ctgaggattaaagttgaaggccccgggtgcaaacccgcgtaaaggagaaagattctaacaaccaattactaacattggcattttaaacgaaatagaaaat |
106 |
Q |
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| T |
7036112 |
ctgaggattagagttggaggccccgggtacaaacccgtgtaaaggagaaagattctaacaaccaattactaacattggcattttaaacgaaatagaaaat |
7036211 |
T |
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| Q |
107 |
taagacttcaaaagattaaataaatttcaaattatctgctttgggatttcacccaaaaccatcatttcattttctatatccccaaattgagtttaaaaac |
206 |
Q |
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| T |
7036212 |
taagacttcaaaagattaaataaatttcaaattatctgctttgggatttcacccaaaaccatcatttcattttctacatccccaaattgagtttaaaaac |
7036311 |
T |
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| Q |
207 |
tatttgccatttatttata |
225 |
Q |
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||||||| ||||||||||| |
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| T |
7036312 |
tatttgcgatttatttata |
7036330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 7897342 - 7897559
Alignment:
| Q |
7 |
ctgaggattaaagttgaaggccccgggtgcaaacccgcgtaaaggagaaagattctaacaaccaattactaacattggcattttaaacgaaatagaaaat |
106 |
Q |
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|||||||||||||||| |||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
7897342 |
ctgaggattaaagttggaggccccgggtgcaaacccgtgtaaaggagaaagataccaacaaccaattactaacattggcattttaaacaaaaaagaaaat |
7897441 |
T |
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| Q |
107 |
taagacttcaaaagattaaataaatttcaaattatctgctttgggatttcacccaaaaccatcatttcattttctatatccccaaattgagtttaaaaac |
206 |
Q |
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| T |
7897442 |
taggacttcaaaagatt-aataaatttcaaattatctgctttgggatttctcccaaaaccatcatttcattttctacatccccaaattgagtttaaaaac |
7897540 |
T |
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| Q |
207 |
tatttgccatttatttata |
225 |
Q |
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|||||| |||||||||||| |
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| T |
7897541 |
tatttggcatttatttata |
7897559 |
T |
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