View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4651_low_6 (Length: 267)

Name: NF4651_low_6
Description: NF4651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4651_low_6
NF4651_low_6
[»] chr4 (12 HSPs)
chr4 (12-259)||(38072879-38073126)
chr4 (16-259)||(38086389-38086632)
chr4 (37-259)||(38081964-38082186)
chr4 (88-259)||(38058551-38058722)
chr4 (27-259)||(38061671-38061903)
chr4 (83-253)||(37954219-37954389)
chr4 (182-249)||(38090795-38090862)
chr4 (172-249)||(36080187-36080264)
chr4 (203-253)||(38125625-38125675)
chr4 (203-249)||(38129582-38129628)
chr4 (185-249)||(34971530-34971594)
chr4 (185-249)||(36108051-36108115)
[»] chr6 (3 HSPs)
chr6 (105-241)||(7001405-7001541)
chr6 (203-242)||(10792884-10792923)
chr6 (86-133)||(10792938-10792985)
[»] chr2 (3 HSPs)
chr2 (149-240)||(11786968-11787059)
chr2 (185-249)||(8338676-8338740)
chr2 (203-253)||(11811316-11811366)
[»] chr1 (2 HSPs)
chr1 (86-133)||(34268650-34268697)
chr1 (203-242)||(34268712-34268751)


Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 12 - 259
Target Start/End: Complemental strand, 38073126 - 38072879
Alignment:
Q  12 cttgtttacttgaatttaaatctagcctttgcaagataatattaatggctaagttttcttcaagtttatgagctacaaactgccacttgtgaacaagctt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38073126 cttgtttacttgaatttaaatctagcctttgcaagataatattaatggctaagttttcttcaagtttatgagctacaaactgccacttgtgaacaagctt 38073027  T
Q  112 tgttgcattttgttccaatgttcttggaacagtgaacaccgtcacagttgatggaacttgaacaagttttatcttccatgaaactatgacaccaaaactt 211  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38073026 tgttgcattttgttccaatgttcttggaacagtaaacaccgttacagttgatggaacttgaacaagtttaatcttccatgaaactatgacaccaaaactt 38072927  T
Q  212 gctcctccaccacctctaatagcccaaaacaaatcttcaccctttgct 259  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  38072926 gctcctccaccacctctaatagcccaaaacaaatcttcacccattgct 38072879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 38086632 - 38086389
Alignment:
Q  16 tttacttgaatttaaatctagcctttgcaagataatattaatggctaagttttcttcaagtttatgagctacaaactgccacttgtgaacaagctttgtt 115  Q
    ||||||||||||||||| || ||||||| ||| |||||| |||||||  ||||| |||||||||   || | ||| ||||||||||||||||||||||||    
T  38086632 tttacttgaatttaaatttaccctttgccagacaatattcatggctatattttcatcaagtttacttgccaaaaattgccacttgtgaacaagctttgtt 38086533  T
Q  116 gcattttgttccaatgttcttggaacagtgaacaccgtcacagttgatggaacttgaacaagttttatcttccatgaaactatgacaccaaaacttgctc 215  Q
    |||||||||||||||||| |||||||||| ||||| |||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  38086532 gcattttgttccaatgtttttggaacagtaaacactgtcacaattgatggaacttcaacaagtttaatcttccatgaaactatgacaccaaaacttgctc 38086433  T
Q  216 ctccaccacctctaatagcccaaaacaaatcttcaccctttgct 259  Q
    ||||||||||||||||||||||||| ||||| |||||| |||||    
T  38086432 ctccaccacctctaatagcccaaaagaaatcctcacccattgct 38086389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 37 - 259
Target Start/End: Complemental strand, 38082186 - 38081964
Alignment:
Q  37 cctttgcaagataatattaatggctaagttttcttcaagtttatgagctacaaactgccacttgtgaacaagctttgttgcattttgttccaatgttctt 136  Q
    |||||| |||| |||||| ||||||| |||||| |||| ||||   || | | |||||||||||||||||||||||||||||||||||||||||| ||||    
T  38082186 cctttgaaagacaatattgatggctatgttttcatcaattttacttgccaaatactgccacttgtgaacaagctttgttgcattttgttccaatgctctt 38082087  T
Q  137 ggaacagtgaacaccgtcacagttgatggaacttgaacaagttttatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagccc 236  Q
    ||||| || ||||||||||| |||| |||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  38082086 ggaactgtaaacaccgtcactgttgctggaacttcaacaagttttatcttccatgaaattatgactccaaaacttgctcctccaccacctctaatagccc 38081987  T
Q  237 aaaacaaatcttcaccctttgct 259  Q
    ||||  ||||||||||| |||||    
T  38081986 aaaaataatcttcacccattgct 38081964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 88 - 259
Target Start/End: Complemental strand, 38058722 - 38058551
Alignment:
Q  88 aaactgccacttgtgaacaagctttgttgcattttgttccaatgttcttggaacagtgaacaccgtcacagttgatggaacttgaacaagttttatcttc 187  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||| |||||||| |||| || |||||| |||||||||||||||||||||| ||||||    
T  38058722 aaactgccacttgtgaataagctttgttgcattgtgttccaatgtttttggaacattgaagactgtcacaattgatggaacttgaacaagtttaatcttc 38058623  T
Q  188 catgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcaccctttgct 259  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38058622 catgaaattatgactccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcacccattgct 38058551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 27 - 259
Target Start/End: Original strand, 38061671 - 38061903
Alignment:
Q  27 ttaaatctagcctttgcaagataatattaatggctaagttttcttcaagtttatgagctacaaactgccacttgtgaacaagctttgttgcattttgttc 126  Q
    |||||| || |||||||||||||| || |||||||| |||||| |||| | ||   |  |||||||||||||||||||||||||||||||||||||| ||    
T  38061671 ttaaatttaccctttgcaagataacataaatggctatgttttcatcaattgtacttgtcacaaactgccacttgtgaacaagctttgttgcattttgatc 38061770  T
Q  127 caatgttcttggaacagtgaacaccgtcacagttgatggaacttgaacaagttttatcttccatgaaactatgacaccaaaacttgctcctccaccacct 226  Q
    ||||||| |||| ||| ||||||| | |||| |||||||||||||||||||||| | ||||||||||| |||||| |||||||||||||||||||| |||    
T  38061771 caatgtttttggcacattgaacactgacacacttgatggaacttgaacaagtttaaccttccatgaaattatgactccaaaacttgctcctccacctcct 38061870  T
Q  227 ctaatagcccaaaacaaatcttcaccctttgct 259  Q
    |||||||||||||| ||||| |||||| |||||    
T  38061871 ctaatagcccaaaaaaaatcctcacccattgct 38061903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 83 - 253
Target Start/End: Complemental strand, 37954389 - 37954219
Alignment:
Q  83 gctacaaactgccacttgtgaacaagctttgttgcattttgttccaatgttcttggaacagtgaacaccgtcacagttgatggaacttgaacaagtttta 182  Q
    ||||| ||||||||||| |||| |||||| ||||| || ||||||| ||| || | |||  |||| |  ||||||||||||||||| ||||| |||||||    
T  37954389 gctactaactgccacttctgaataagcttggttgcgttatgttccagtgtcctagaaactctgaatattgtcacagttgatggaacatgaactagtttta 37954290  T
Q  183 tcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcaccc 253  Q
     ||||||||  |  || || ||||| |||||||||||||| ||||||||||||||||||| ||| ||||||    
T  37954289 ccttccatgctatgataactccaaagcttgctcctccacctcctctaatagcccaaaacagatcctcaccc 37954219  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 38090862 - 38090795
Alignment:
Q  182 atcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttc 249  Q
    |||||||| ||||| || ||||||||||| ||||| ||||||||||||||||||||||| | ||||||    
T  38090862 atcttccaagaaacaataacaccaaaactagctccaccaccacctctaatagcccaaaaaacatcttc 38090795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 36080264 - 36080187
Alignment:
Q  172 aacaagttttatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttc 249  Q
    ||||||||| |||||||||  ||  ||||||||||||||||| || |||||||| || ||||||||||| ||||||||    
T  36080264 aacaagtttaatcttccatttaagaatgacaccaaaacttgcaccaccaccaccccttatagcccaaaataaatcttc 36080187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 253
Target Start/End: Complemental strand, 38125675 - 38125625
Alignment:
Q  203 ccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcaccc 253  Q
    |||||||||||||||||||| ||||||||||||||||| |  |||||||||    
T  38125675 ccaaaacttgctcctccacctcctctaatagcccaaaaaagttcttcaccc 38125625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 38129628 - 38129582
Alignment:
Q  203 ccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttc 249  Q
    |||||||||||||||||||| ||||||||||||||||| | ||||||    
T  38129628 ccaaaacttgctcctccacctcctctaatagcccaaaaaagatcttc 38129582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 34971530 - 34971594
Alignment:
Q  185 ttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttc 249  Q
    ||||||||||  || ||||||||||| || || ||||||||||| ||||||||||| | ||||||    
T  34971530 ttccatgaaagaataacaccaaaactagcaccaccaccacctctgatagcccaaaagagatcttc 34971594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 36108115 - 36108051
Alignment:
Q  185 ttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttc 249  Q
    ||||||||||  || ||||||||||| || || ||||||||||| ||||||||||| | ||||||    
T  36108115 ttccatgaaagaataacaccaaaactagcaccaccaccacctcttatagcccaaaaaagatcttc 36108051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 105 - 241
Target Start/End: Original strand, 7001405 - 7001541
Alignment:
Q  105 caagctttgttgcattttgttccaatgttcttggaacagtgaacaccgtcacagttgatggaacttgaacaagttttatcttccatgaaactatgacacc 204  Q
    ||||||||||||||||||| ||||||||| |||| | | | ||||| |||| | || ||||||||| || |||||| ||||||||||||| |||||| ||    
T  7001405 caagctttgttgcattttgatccaatgtttttggcaaattcaacactgtcatactttatggaactttaataagtttaatcttccatgaaattatgactcc 7001504  T
Q  205 aaaacttgctcctccaccacctctaatagcccaaaac 241  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  7001505 aaaacttgctcctccagcacctctaatagctcaaaac 7001541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 10792923 - 10792884
Alignment:
Q  203 ccaaaacttgctcctccaccacctctaatagcccaaaaca 242  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  10792923 ccaaaacttgctcctccacctcctctaatagctcaaaaca 10792884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 133
Target Start/End: Complemental strand, 10792985 - 10792938
Alignment:
Q  86 acaaactgccacttgtgaacaagctttgttgcattttgttccaatgtt 133  Q
    |||| |||||| ||||||||||| |||||||||||||| |||||||||    
T  10792985 acaagctgccaattgtgaacaagttttgttgcattttgatccaatgtt 10792938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 11786968 - 11787059
Alignment:
Q  149 accgtcacagttgatggaacttgaacaagttttatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaa 240  Q
    |||||||| |||  ||||||  |||||||||||||||||||  |||  |  | |||||||||| | ||||||||||||||||||||||||||    
T  11786968 accgtcacggtttttggaacaggaacaagttttatcttccaccaaagaagaataccaaaacttccacctccaccacctctaatagcccaaaa 11787059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 8338740 - 8338676
Alignment:
Q  185 ttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttc 249  Q
    ||||||||||  || ||||||||||| || || |||||||| |||||||||||||||| ||||||    
T  8338740 ttccatgaaagaataacaccaaaactagcaccaccaccacccctaatagcccaaaacagatcttc 8338676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 11811316 - 11811366
Alignment:
Q  203 ccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcaccc 253  Q
    ||||| |||| ||||||||| ||||| ||||||||||| ||||||||||||    
T  11811316 ccaaagcttgatcctccacctcctcttatagcccaaaataaatcttcaccc 11811366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 133
Target Start/End: Original strand, 34268650 - 34268697
Alignment:
Q  86 acaaactgccacttgtgaacaagctttgttgcattttgttccaatgtt 133  Q
    |||| |||||| ||||||||||| |||||||||||||| |||||||||    
T  34268650 acaagctgccaattgtgaacaagttttgttgcattttgatccaatgtt 34268697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 34268712 - 34268751
Alignment:
Q  203 ccaaaacttgctcctccaccacctctaatagcccaaaaca 242  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  34268712 ccaaaacttgctcctccacctcctctaatagctcaaaaca 34268751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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