View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4652-Insertion-1 (Length: 1078)
Name: NF4652-Insertion-1
Description: NF4652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4652-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 425 - 1014
Target Start/End: Original strand, 34765170 - 34765761
Alignment:
| Q |
425 |
taaagtgacctgcctctaatagccaattccaaaccaaaaatcaaatatcttcaaagtacatattaacaacaatgttcaaggtttgatgcattgaaagagt |
524 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34765170 |
taaagtgacctgcctctaatagccaattccaaaccaaaaatcaaatatcttcaaagtacatattaacaacaatgttcaaggtttgatgcattgaaagagt |
34765269 |
T |
|
| Q |
525 |
gagaggatcaagcgttggaacgaggaatgtgacaatgaactcattgtggttacggataataattttcacatgtgaattcatttgagctcaaatacaaact |
624 |
Q |
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| T |
34765270 |
gagaggatcaagtgttggaacgaggaatgtgacaatgaactcattgtggttacggataataattttcacatgtgaattcatttgagctcaaatacaaact |
34765369 |
T |
|
| Q |
625 |
tattgtaaagcttgttgcatgaccaaactcttgaggcatgcaactggataagctgttatagctcaaatccaaaaaagttagcttctgaaaatttggtaca |
724 |
Q |
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| T |
34765370 |
tattgtaaagcttgttgcatgaccaaactcttgaggcatgcaactggataagctgttatagctcaaatccaaaaaagttagcttctgaaaatttggtaca |
34765469 |
T |
|
| Q |
725 |
gattttcaaattgaacctattaataatattattgttgagaataagcttgctcaaataacgatggaatttcgccaccaagggtggttattatgcacatcta |
824 |
Q |
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| T |
34765470 |
gattttcaaattgaacctattaataatattattgttgagaataagcttgctcaaataacgacggaatttcgccaccaa-ggtggttattatgcacatcta |
34765568 |
T |
|
| Q |
825 |
aaacctcaagaactgtaatattagcaatctcgtctggtttactttagcaaagactcacatttagcaacacggtggcaacttctcaacgattaattttcaa |
924 |
Q |
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| T |
34765569 |
aaacctcaagaactgtaatattagcaatctcgtctggttaactttagcaaagactcacatttagcaacacggtggcaacttcgcatcgattaattttcaa |
34765668 |
T |
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| Q |
925 |
gaagcagaggcttactcatcttgtggc-aactaaagaagatctc-tctggaatagaacttgttaacctatttcttgaacag-tttcagattag |
1014 |
Q |
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| T |
34765669 |
gaagcagaagcttactcatcttgtggcaaactaaagaagatctcttctggaatagaacttgttaacctatttcttgaacagttttcagattag |
34765761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 8e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 319 - 595
Target Start/End: Complemental strand, 6440754 - 6440469
Alignment:
| Q |
319 |
ttttgagttaaggcataacaagttacaggaccaacatttgagaccaaaaaacgtgccaaggcggaactaaatttgtattataaag----------ccaaa |
408 |
Q |
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| T |
6440754 |
ttttgagataaggcatgacaagttacaagaccaaaatttgagatcaaaacataagccaagatagaacaaaatttgtagtataaagatgtgtcaagccaaa |
6440655 |
T |
|
| Q |
409 |
caaaaacatacaatagtaaagtgacctgcctctaatagccaattccaaaccaaaaatcaaatatcttcaaagtacatattaacaacaatgttcaaggttt |
508 |
Q |
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|||| ||| || |||| ||| | |||| | ||||| | |||||||||||||||||||||||||||||| ||| || |||| ||| | ||||||| || |
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| T |
6440654 |
caaatacaaactatagaaaattaacctacttctaaaacccaattccaaaccaaaaatcaaatatcttcgaagggcacatta-caatagtgttcaatactt |
6440556 |
T |
|
| Q |
509 |
gatgcattgaaagagtgagaggatcaagcgttggaacgaggaatgtgacaatgaactcattgtggttacggataataattttcacat |
595 |
Q |
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| | ||||||| |||||||| || ||| ||||||||||||||||||||||||||||||||||||||| |||||| | |||||||| |
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| T |
6440555 |
gctacattgaaggagtgagacgaccaaatgttggaacgaggaatgtgacaatgaactcattgtggttaacgataatgaatttcacat |
6440469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 809 - 856
Target Start/End: Complemental strand, 6401752 - 6401705
Alignment:
| Q |
809 |
ttattatgcacatctaaaacctcaagaactgtaatattagcaatctcg |
856 |
Q |
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| T |
6401752 |
ttattatgcacatctataagctcaagaactgtaatattagcaatctcg |
6401705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 604 - 781
Target Start/End: Original strand, 44015301 - 44015477
Alignment:
| Q |
604 |
atttgagctcaaatacaaacttattgtaaagcttgttgcatgaccaaactcttgaggcatgcaactggataagctgttatagctcaaatccaaaaaagtt |
703 |
Q |
| |
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|||||||||||||| |||||| ||||| | |||||| ||||||||| |||| |||| |||| || |||||||| ||||| ||||||||||||| |||| |
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| T |
44015301 |
atttgagctcaaatccaaactgattgttaggcttgtaacatgaccaatctctggaggtatgctaccagataagctattataactcaaatccaaaagagtt |
44015400 |
T |
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| Q |
704 |
agcttctgaaaatttggtacagattttcaaattgaacctattaataatattattgttgagaataagcttgctcaaata |
781 |
Q |
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| T |
44015401 |
agcttctgtagatttctaacagattttggtattgagcctgttaataa-attattgttgagaataagcttgttcaaata |
44015477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 497 - 572
Target Start/End: Original strand, 895426 - 895501
Alignment:
| Q |
497 |
tgttcaaggtttgatgcattgaaagagtgagaggatcaagcgttggaacgaggaatgtgacaatgaactcattgtg |
572 |
Q |
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|||||||| ||| ||||||||| |||| |||||| ||| ||||||| || ||||||||||||||| |||||||| |
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| T |
895426 |
tgttcaagacttgttgcattgaaggagtaagaggagaaagtgttggaatgatgaatgtgacaatgaattcattgtg |
895501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 497 - 572
Target Start/End: Complemental strand, 905214 - 905139
Alignment:
| Q |
497 |
tgttcaaggtttgatgcattgaaagagtgagaggatcaagcgttggaacgaggaatgtgacaatgaactcattgtg |
572 |
Q |
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|||||||| ||| ||||||||| |||| |||||| ||| ||||||| || ||||||||||||||| |||||||| |
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| T |
905214 |
tgttcaagacttgttgcattgaaggagtaagaggacaaagtgttggaatgatgaatgtgacaatgaattcattgtg |
905139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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