View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4652-Insertion-10 (Length: 337)
Name: NF4652-Insertion-10
Description: NF4652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4652-Insertion-10 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 7 - 337
Target Start/End: Complemental strand, 5949265 - 5948933
Alignment:
| Q |
7 |
atagtacaccagaaaggtaggggaaatatctatttattttatgagcaagcaagtnnnnnnnnnnnnnnngcataacacaggaggaattaattgtattctt |
106 |
Q |
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| T |
5949265 |
atagtacaccagaaaggtaggggaaatatctatttattttatgagcaagcaagtcatgcacatatata-gcataacacaggaggaattaattgtattctt |
5949167 |
T |
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| Q |
107 |
ccggttcttctgtgttacatataagcacagagggttctaagataacataaacataaactgcatatactactatactgccttaaagctattagcagggttt |
206 |
Q |
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| T |
5949166 |
ccggttcttctgtgttacatataagcacagagggttctaagataacataaacataaactgcatatactactaaactgccttaaagctattagcagggttt |
5949067 |
T |
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| Q |
207 |
gattattgatcatatatcacctcttataata---attagttcttgccaaaaccacgagtgaggagataatcaactaaagtgtcgatttcctcgccactga |
303 |
Q |
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| T |
5949066 |
gattattgatcatatatcacctcttataataattattagttcttgccaaaaccacgagtgaggagataatcaactaaagtgtcgatttcctcgccactga |
5948967 |
T |
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| Q |
304 |
ttagtccatctttattggcatcagctttcatcaa |
337 |
Q |
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| T |
5948966 |
ttagtccgtctttattggcatcagctttcatcaa |
5948933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 76 - 334
Target Start/End: Complemental strand, 5954848 - 5954583
Alignment:
| Q |
76 |
gcataacacaggaggaattaattgtattcttccggttcttctgtgttacatataagcacagagggttctaagat-----aacataaacataaactgcata |
170 |
Q |
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| T |
5954848 |
gcataacacaggaagaattaattgtattcctccggttcttctgcgttacatataagcatagatggttttaatattgattaacataaacacaaactgcata |
5954749 |
T |
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| Q |
171 |
ta--ctactata--ctgccttaaagctattagcagggtttgattattgatcatatatcacctcttataataattagttcttgccaaaaccacgagtgagg |
266 |
Q |
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| T |
5954748 |
tatactactatatactgcattaaagctattagcatgatttgattattgatcatatatcacctctta--ataattagttcttgccaaaaccacgggtaagg |
5954651 |
T |
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| Q |
267 |
agataatcaactaaagtgtcgatttcctcgccactgattagtccatctttattggcatcagctttcat |
334 |
Q |
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| T |
5954650 |
agataatcaattaaagtgtcgatttcctcgccactgatttgtccgtctttgttggcatcagctttcat |
5954583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 331
Target Start/End: Complemental strand, 5937836 - 5937748
Alignment:
| Q |
243 |
ttcttgccaaaaccacgagtgaggagataatcaactaaagtgtcgatttcctcgccactgattagtccatctttattggcatcagcttt |
331 |
Q |
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| T |
5937836 |
ttctttccaaaaccacgggtaaggagataatcaattaaagtatcaatttcctcaccactgatttctccatctttgttgaaatcagcttt |
5937748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 5954924 - 5954887
Alignment:
| Q |
11 |
tacaccagaaaggtaggggaaatatctatttattttat |
48 |
Q |
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| T |
5954924 |
tacaccagaaaggcaggggaaatatctatttattttat |
5954887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 267 - 326
Target Start/End: Complemental strand, 5960894 - 5960835
Alignment:
| Q |
267 |
agataatcaactaaagtgtcgatttcctcgccactgattagtccatctttattggcatca |
326 |
Q |
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| T |
5960894 |
agataatcaactaaagtatcaatttcctcaccactaatttgtccatcattgttggcatca |
5960835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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