View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4652-Insertion-12 (Length: 317)

Name: NF4652-Insertion-12
Description: NF4652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4652-Insertion-12
NF4652-Insertion-12
[»] chr4 (2 HSPs)
chr4 (48-317)||(21834448-21834716)
chr4 (205-246)||(1600295-1600336)
[»] chr5 (1 HSPs)
chr5 (8-115)||(28524924-28525035)
[»] chr3 (2 HSPs)
chr3 (71-113)||(46926701-46926743)
chr3 (137-166)||(51764737-51764766)
[»] chr6 (9 HSPs)
chr6 (204-309)||(6594756-6594861)
chr6 (208-317)||(7994324-7994433)
chr6 (196-317)||(19632275-19632396)
chr6 (196-317)||(6589465-6589586)
chr6 (196-317)||(10579879-10580000)
chr6 (196-317)||(6394700-6394821)
chr6 (196-281)||(6423053-6423138)
chr6 (201-237)||(6597120-6597156)
chr6 (8-76)||(14800872-14800940)
[»] chr7 (2 HSPs)
chr7 (196-316)||(15092294-15092414)
chr7 (137-166)||(10614398-10614427)


Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 48 - 317
Target Start/End: Complemental strand, 21834716 - 21834448
Alignment:
Q  48 taaaactatgtacacacacatttaacaacacgacattcaaccgcttgcattacattgtacattatatatactttggaaattatcaagcaatgagtaaatg 147  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21834716 taaaactatgaacacacacatttaacaacacgacattcaaccgcttgcattacattgtacattatatatactttggaaattatcaagcaatgagtaaatg 21834617  T
Q  148 cacatttgtaagttgacataaaatcttaaaacaaaaactacttacaggatactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtct 247  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  21834616 cacatttgtaagttgacataaaatcttaaaacaaaaac-acttacaggatactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtca 21834518  T
Q  248 cttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttttctaccatatgtttcactccct 317  Q
    |||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||| |||||    
T  21834517 cttaaatgcaaatcccccaaattaatttctctcagttgtgtacatctttctaccatatgtttcattccct 21834448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 1600295 - 1600336
Alignment:
Q  205 aagaaggcatccacgacgcgagaagaatttcctcttttcgtc 246  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||    
T  1600295 aagaaggcatccatgactcgagaagaatttcctattttcgtc 1600336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 28524924 - 28525035
Alignment:
Q  8 gaggtggtatttgagagtacaacgatggtaaaaataaaactaaaactatgt----acacacacatttaacaacacgacattcaaccgcttgcattacatt 103  Q
    |||||||  |||||| ||||||||||||||||||||| | |||||||||||    | ||||||||||||||| ||  || ||||| ||||||||| ||||    
T  28524924 gaggtggcgtttgagggtacaacgatggtaaaaataatagtaaaactatgtccacatacacacatttaacaaaacttcactcaactgcttgcattgcatt 28525023  T
Q  104 gtacattatata 115  Q
    | ||||||||||    
T  28525024 gcacattatata 28525035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 46926701 - 46926743
Alignment:
Q  71 aacaacacgacattcaaccgcttgcattacattgtacattata 113  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  46926701 aacaacacgacattcaaccgcttgcattacattgtacattata 46926743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 166
Target Start/End: Complemental strand, 51764766 - 51764737
Alignment:
Q  137 atgagtaaatgcacatttgtaagttgacat 166  Q
    ||||||||||||||||||||||||||||||    
T  51764766 atgagtaaatgcacatttgtaagttgacat 51764737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 309
Target Start/End: Complemental strand, 6594861 - 6594756
Alignment:
Q  204 aaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttttctaccat 303  Q
    ||||||||||||| ||||||||||||| || |||  ||||||| ||||||||  || ||| |||||  |||||||||| | |||| || ||||||||||     
T  6594861 aaagaaggcatccccgacgcgagaagagttccctaatttcgtcacttaaatgacaacccctcaaatacatttctctcaattgtgtgcagttttctaccac 6594762  T
Q  304 atgttt 309  Q
    ||||||    
T  6594761 atgttt 6594756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 317
Target Start/End: Complemental strand, 7994433 - 7994324
Alignment:
Q  208 aaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttttctaccatatgt 307  Q
    |||||||||  |||||||||||| || ||| |||| ||| |||| ||| |||||||| |||| ||| ||| ||||| | || || |||||||||| ||||    
T  7994433 aaggcatccgtgacgcgagaagagttccctatttttgtcacttatatgaaaatcccctaaataaatctctttcagttgcgtgcagttttctaccacatgt 7994334  T
Q  308 ttcactccct 317  Q
    ||||||||||    
T  7994333 ttcactccct 7994324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 317
Target Start/End: Original strand, 19632275 - 19632396
Alignment:
Q  196 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttt 295  Q
    |||||||||||||||||||||| ||||| || ||| ||||||  ||| ||| ||| |||| | ||||||||||| ||| ||  ||||| || | || |||    
T  19632275 atactagcaaagaaggcatccatgacgcaagcagagtttcctagttttgtcacttgaatgaatatcccccaaataaatctccttcagttgtttgcagttt 19632374  T
Q  296 tctaccatatgtttcactccct 317  Q
    |||||||  |||||||||||||    
T  19632375 tctaccacgtgtttcactccct 19632396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 317
Target Start/End: Complemental strand, 6589586 - 6589465
Alignment:
Q  196 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttt 295  Q
    ||||||| ||||| |||||||| || | ||||||| || |||  ||| ||| |||||||| | |||||||| || ||| |||   |||||||| || |||    
T  6589586 atactagtaaagatggcatccatgatgggagaagatttccctagttttgtcacttaaatgaatatcccccagataaatctcttgaagtcgtgtgcagttt 6589487  T
Q  296 tctaccatatgtttcactccct 317  Q
    ||||||| ||||||||||||||    
T  6589486 tctaccacatgtttcactccct 6589465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 317
Target Start/End: Complemental strand, 10580000 - 10579879
Alignment:
Q  196 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttt-tcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacattt 294  Q
    |||||||||||||||||||||| ||||| ||||||||  ||| ||| || || |||||||  |||||  |||| | ||| ||||| ||| |||| || ||    
T  10580000 atactagcaaagaaggcatccatgacgcaagaagaatcccctatttatcctc-cttaaatctaaatcatccaagtaaatctctctaagttgtgtgcagtt 10579902  T
Q  295 ttctaccatatgtttcactccct 317  Q
    |||||||| |||||| |||||||    
T  10579901 ttctaccacatgtttaactccct 10579879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 317
Target Start/End: Original strand, 6394700 - 6394821
Alignment:
Q  196 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttt 295  Q
    ||||||||||| | |||||||||||||| | |  | || ||| |||||||| |||| ||  | ||||||||||| ||| ||||||| | |||| || |||    
T  6394700 atactagcaaatacggcatccacgacgcaatagaagttccctattttcgtcacttacatcaatatcccccaaattaatctctctcaattgtgtgcagttt 6394799  T
Q  296 tctaccatatgtttcactccct 317  Q
    ||||||| ||||| ||| ||||    
T  6394800 tctaccacatgttccacaccct 6394821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 281
Target Start/End: Original strand, 6423053 - 6423138
Alignment:
Q  196 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctca 281  Q
    |||||||||||||||||||||||||  | ||| || |||| | |||| ||| |||| ||| ||||| ||||||| ||| |||||||    
T  6423053 atactagcaaagaaggcatccacgatccaagatgagtttcttatttttgtcacttacatgaaaatctcccaaataaatctctctca 6423138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 6597156 - 6597120
Alignment:
Q  201 agcaaagaaggcatccacgacgcgagaagaatttcct 237  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  6597156 agcaaagaaggcatccatgacgcaagaagaatttcct 6597120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 14800872 - 14800940
Alignment:
Q  8 gaggtggtatttgagagtacaacgatggtaaaaataaaactaaaactatgtacacacacatttaacaac 76  Q
    |||||||  |||||| |||||| |  ||||| ||| |||||||  ||||||||||||||||||||||||    
T  14800872 gaggtggagtttgagggtacaatggcggtaacaatgaaactaatgctatgtacacacacatttaacaac 14800940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 196 - 316
Target Start/End: Complemental strand, 15092414 - 15092294
Alignment:
Q  196 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttt 295  Q
    ||||||||||| | ||||||||||||||||||| | ||||||  ||| ||| |||| ||| | || || ||||| ||| ||||||| | |||| || |||    
T  15092414 atactagcaaatatggcatccacgacgcgagaatagtttcctagttttgtcacttacatggatataccgcaaattaatctctctcaattgtgtgcagttt 15092315  T
Q  296 tctaccatatgtttcactccc 316  Q
    |||| || |||||||||||||    
T  15092314 tctagcacatgtttcactccc 15092294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 166
Target Start/End: Original strand, 10614398 - 10614427
Alignment:
Q  137 atgagtaaatgcacatttgtaagttgacat 166  Q
    ||||||||||||||||||||||||||||||    
T  10614398 atgagtaaatgcacatttgtaagttgacat 10614427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University