View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4652-Insertion-14 (Length: 287)

Name: NF4652-Insertion-14
Description: NF4652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4652-Insertion-14
NF4652-Insertion-14
[»] chr8 (1 HSPs)
chr8 (9-287)||(12507239-12507517)


Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 9 - 287
Target Start/End: Original strand, 12507239 - 12507517
Alignment:
Q  9 acaccacgtgctataaagagcctaaagtgaaatgataataacatagttgcaaaaaataaataaataaagatattaattatgctctttaagtaaaaagtat 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12507239 acaccacgtgctataaagagcctaaagtgaaatgataataacatagttgcaaaaaataaataaataaaaatattaattatgctctttaagtaaaaagtat 12507338  T
Q  109 tgccaatatattttcattccaaagatgtttaattacaatcacaaatatactttggcatatctatctatataatttgcagcaactcaaattaacatagttg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12507339 tgccaatatattttcattccaaagatgtttaattacaatcacaaatatactttggcatatctatctatataatttgcagcaactcaaattaacatagttg 12507438  T
Q  209 catccaagactttacatataaaatcgatttgaaaagagagttcatttttcagccaaattttcatttatcattaatttca 287  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12507439 catccaagactttacatataaaatcgatttgaaatgagagttcatttttcagccaaattttcatttatcattaatttca 12507517  T

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