View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4652-Insertion-15 (Length: 138)
Name: NF4652-Insertion-15
Description: NF4652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4652-Insertion-15 |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 1e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 1e-63
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 2737444 - 2737574
Alignment:
| Q |
8 |
aattcaacgaagaacaaattaaattctttaggagtaatcggttgttaaaaagttaataataataattctgaatgccaaagacatactcattgtctagaaa |
107 |
Q |
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| T |
2737444 |
aattcaacgaagaacaaattaaattctttaggagtaatcgattgttaaaaagttaataataataattctgaatgccaaagacatactcattgtctagaaa |
2737543 |
T |
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| Q |
108 |
atttgaagctcacaaatttgaagtttgcaaa |
138 |
Q |
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| T |
2737544 |
atttgaagctcgcaaatttgaagtttgcaaa |
2737574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 2e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 2e-56
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 44546878 - 44546748
Alignment:
| Q |
8 |
aattcaacgaagaacaaattaaattctttaggagtaatcggttgttaaaaagttaataataataattctgaatgccaaagacatactcattgtctagaaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
44546878 |
aattcaacgaagaacaaattaaattctttaggagtaatcgattgttaaaaagttaataataataattttgaatgctaaagacatactcattgtctagaaa |
44546779 |
T |
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| Q |
108 |
atttgaagctcacaaatttgaagtttgcaaa |
138 |
Q |
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| T |
44546778 |
atttgaagctcgtaaatttgaagtttgcaaa |
44546748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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