View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4652-Insertion-2 (Length: 1034)

Name: NF4652-Insertion-2
Description: NF4652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4652-Insertion-2
NF4652-Insertion-2
[»] chr5 (6 HSPs)
chr5 (29-1022)||(35622991-35623979)
chr5 (7-136)||(34263862-34263991)
chr5 (540-588)||(43405696-43405744)
chr5 (540-588)||(4348011-4348059)
chr5 (540-590)||(27721194-27721244)
chr5 (7-37)||(35622780-35622810)
[»] chr8 (5 HSPs)
chr8 (7-215)||(14542740-14542948)
chr8 (7-220)||(14580639-14580852)
chr8 (549-590)||(11452958-11452999)
chr8 (544-592)||(10869577-10869625)
chr8 (540-598)||(44517617-44517675)
[»] chr4 (7 HSPs)
chr4 (7-140)||(37599763-37599896)
chr4 (535-588)||(26332939-26332992)
chr4 (542-592)||(3326582-3326632)
chr4 (560-598)||(9608043-9608081)
chr4 (540-578)||(25442150-25442188)
chr4 (558-592)||(28701702-28701736)
chr4 (15-72)||(10403887-10403944)
[»] chr7 (8 HSPs)
chr7 (210-289)||(29678868-29678948)
chr7 (540-592)||(11828863-11828915)
chr7 (540-588)||(47270970-47271018)
chr7 (540-588)||(40143567-40143615)
chr7 (540-592)||(46823364-46823416)
chr7 (540-588)||(47456595-47456643)
chr7 (540-591)||(25656911-25656962)
chr7 (558-588)||(27386902-27386932)
[»] chr2 (5 HSPs)
chr2 (540-592)||(12949559-12949611)
chr2 (528-588)||(2522541-2522601)
chr2 (540-590)||(45446566-45446616)
chr2 (542-590)||(2358355-2358403)
chr2 (558-588)||(373128-373158)
[»] chr1 (5 HSPs)
chr1 (542-592)||(24339324-24339374)
chr1 (541-590)||(44483830-44483879)
chr1 (544-588)||(39426044-39426088)
chr1 (540-579)||(10778062-10778101)
chr1 (540-591)||(46608340-46608391)
[»] scaffold0252 (1 HSPs)
scaffold0252 (542-588)||(10438-10484)
[»] scaffold0007 (1 HSPs)
scaffold0007 (559-592)||(246312-246345)


Alignment Details
Target: chr5 (Bit Score: 766; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 766; E-Value: 0
Query Start/End: Original strand, 29 - 1022
Target Start/End: Original strand, 35622991 - 35623979
Alignment:
Q  29 gaatgattgttgtgcatcaaagaacattgctattgctacaagaacagcttgtaagaaatccatccacccaaaatttgataaacttttttctatgattaca 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35622991 gaatgattgttgtgcatcaaagaacattgctattgctacaagaacagcttgtaagaaatccatccacccaaaatttgataaacttttttctatgattaca 35623090  T
Q  129 tcccatgataaccttggtttattttcttgctcaatattggaacgaaattcaggtacatcaatttgcaccggaccttccattgctattactaaaagccaat 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35623091 tcccatgataaccttggtttattttcttgctcaatattggaacgagattcaggtacatcaatttgcaccggaccttccattgctattactaaaagccaat 35623190  T
Q  229 aaaattattcttatagaaagatcaataaaattattaataagaaaatccaaacgactacacagtacagatttttataacattacgttactactaaaatgta 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35623191 aaaattattcttatagaaagatcaataaaattattaataagaaaatccaaacgactacacagtacagatttttataacattacgttactactaaaatgta 35623290  T
Q  329 ttgaaaagaggcaatgaaatcccttnnnnnnnggcaacaagatgactatagagtacagctaaaaagaaagacatttttatagagaaataaaatacatgaa 428  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||    
T  35623291 ttgaaaagaggcaatgaaatcccttaaaaaaaggcaacaagatgactatagagtacagctaaaaagaaagacatttttgtagtaaaataaaatacatgaa 35623390  T
Q  429 ataaaggcagacaactaaatgaagaaagt-nnnnnnnnncctatttctcttaacggtgttcaacgagagttaagatcatctccatttatgatatttttca 527  Q
    |||||||||||||||||||||||||||||          |||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  35623391 ataaaggcagacaactaaatgaagaaagtaaaaaaaaaacctacttctcttaacactgttcaacgagagttaagatcatctccatttatgatatttttca 35623490  T
Q  528 tttgtgagtatctctctttctaaatgatattctccatttatttttataaatggagaggatccttaatcgttcagcggcactcccttcaccccctctcatt 627  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35623491 tttgtgagtatctctctttctaaatgacattctccatttatttttataaatggagaggatccttaatcgttcagccgcactcccttcaccccctctcatt 35623590  T
Q  628 atcattccaagactttcttctctctaacctagatctgtactatgcaacccttccatccgtttagccgactcttatattttcactctcttttctctacccc 727  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35623591 atcatcccaagactttcttctctctaacctagatctgtactatgcaacccttccatccgtttagccgactcttatattttcactctcttttctctacccc 35623690  T
Q  728 agatctacatctcatttctaattttcttgattgtgtttctttcnnnnnnnnattaagnnnnnnnnnntgaacaatcatgtgttgaaccggttcggttcac 827  Q
    |||||||||||||||||||||||||||||||||| |||||||         |||||           ||||||||||||| |||||||||| ||||||||    
T  35623691 agatctacatctcatttctaattttcttgattgtatttcttt---ttttttattaa---aaaaaaaatgaacaatcatgtattgaaccggtccggttcac 35623784  T
Q  828 caaacaccgcccgggttattggtttttatcaattttgaccgagtcacaccagttctcttgcatgcccgatccaatgagcagctcggcccagtcataccac 927  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  35623785 caaacaccgcccgggttactggtttttatcaattttgaccgagtcacaccagttctcttgcatgcccgatctagtgagcagctcggcccagtcataccac 35623884  T
Q  928 cgggttttcagtcgaaccggtccaaccagctgatctgatcgggtatttgtcgtactacacatacaactttgttttcca-cgggacacaatttctga 1022  Q
    | ||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||| |  ||||||||||||||    
T  35623885 c-ggttttcagtcgaaccgatccaaccagctggtctgatcaggtatttgtcgtactacccatacaactttgttttccaccatgacacaatttctga 35623979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 7 - 136
Target Start/End: Original strand, 34263862 - 34263991
Alignment:
Q  7 aattatcagtgtaaatgcttatgaatgattgttgtgcatcaaagaacattgctattgctacaagaacagcttgtaagaaatccatccacccaaaatttga 106  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| || | |||||||||||||||||| |||||||||||||| |||||||||||    
T  34263862 aattatcagtgtaaatgcttatgaatgactgttgtgcatcaaagaacatagcaaatgctacaagaacagcttgaaagaaatccatccaaccaaaatttga 34263961  T
Q  107 taaacttttttctatgattacatcccatga 136  Q
    ||||||||||||||| ||| ||||||||||    
T  34263962 taaacttttttctattatttcatcccatga 34263991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 540 - 588
Target Start/End: Original strand, 43405696 - 43405744
Alignment:
Q  540 tctctttctaaatgatattctccatttatttttataaatggagaggatc 588  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||    
T  43405696 tctctttctaaatgatattctccatttatttttattgatggagaggatc 43405744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 540 - 588
Target Start/End: Complemental strand, 4348059 - 4348011
Alignment:
Q  540 tctctttctaaatgatattctccatttatttttataaatggagaggatc 588  Q
    ||||||||||||||  |||||||||||||||||||| ||||||||||||    
T  4348059 tctctttctaaatggcattctccatttatttttatatatggagaggatc 4348011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 540 - 590
Target Start/End: Original strand, 27721194 - 27721244
Alignment:
Q  540 tctctttctaaatgatattctccatttatttttataaatggagaggatcct 590  Q
    |||||||||||||  |||  ||||||||||||||| |||||||||||||||    
T  27721194 tctctttctaaattgtatcttccatttatttttattaatggagaggatcct 27721244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 37
Target Start/End: Original strand, 35622780 - 35622810
Alignment:
Q  7 aattatcagtgtaaatgcttatgaatgattg 37  Q
    |||||||||||||||||||||||||||||||    
T  35622780 aattatcagtgtaaatgcttatgaatgattg 35622810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 153; Significance: 1e-80; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 14542948 - 14542740
Alignment:
Q  7 aattatcagtgtaaatgcttatgaatgattgttgtgcatcaaagaacattgctattgctacaagaacagcttgtaagaaatccatccacccaaaatttga 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||    
T  14542948 aattatcagtgtaaatgcttatgaatgattgttgtgcatcaaagaacattgcaactgcaacaagaacagcttgtaagaaatccatccacccaaaatttga 14542849  T
Q  107 taaacttttttctatgattacatcccatgataaccttggtttattttcttgctcaatattggaacgaaattcaggtacatcaatttgcaccggaccttcc 206  Q
    ||||||||||||||| |||||||||||||| ||  ||||||| ||||||||||||||||||||| || |||||||||||| |||||| || | |||||||    
T  14542848 taaacttttttctataattacatcccatgacaaaattggtttcttttcttgctcaatattggaatgagattcaggtacattaatttgtactgaaccttcc 14542749  T
Q  207 attgctatt 215  Q
    |||||||||    
T  14542748 attgctatt 14542740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 150; E-Value: 9e-79
Query Start/End: Original strand, 7 - 220
Target Start/End: Original strand, 14580639 - 14580852
Alignment:
Q  7 aattatcagtgtaaatgcttatgaatgattgttgtgcatcaaagaacattgctattgctacaagaacagcttgtaagaaatccatccacccaaaatttga 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||    
T  14580639 aattatcagtgtaaatgcttatgaatgattgttgtgcatcaaagaacattgcaactgcaacaagaacagcttgtaagaaatccatccacccaaaatttga 14580738  T
Q  107 taaacttttttctatgattacatcccatgataaccttggtttattttcttgctcaatattggaacgaaattcaggtacatcaatttgcaccggaccttcc 206  Q
    ||||||||||||||| |||||||||||||| ||  ||||||| ||||||||||||||||||||| || ||||| |||||| |||||| || | |||||||    
T  14580739 taaacttttttctataattacatcccatgacaaaattggtttcttttcttgctcaatattggaatgagattcaagtacattaatttgtactgaaccttcc 14580838  T
Q  207 attgctattactaa 220  Q
    ||||||||| ||||    
T  14580839 attgctattgctaa 14580852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 549 - 590
Target Start/End: Complemental strand, 11452999 - 11452958
Alignment:
Q  549 aaatgatattctccatttatttttataaatggagaggatcct 590  Q
    ||||| || |||||||||||||||||||||||||||||||||    
T  11452999 aaatggtaatctccatttatttttataaatggagaggatcct 11452958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 544 - 592
Target Start/End: Original strand, 10869577 - 10869625
Alignment:
Q  544 tttctaaatgatattctccatttatttttataaatggagaggatcctta 592  Q
    ||||||||||| |||||| ||||| ||||||||| ||||||||||||||    
T  10869577 tttctaaatgacattctcaatttaattttataaacggagaggatcctta 10869625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 540 - 598
Target Start/End: Complemental strand, 44517675 - 44517617
Alignment:
Q  540 tctctttctaaatgatattctccatttatttttataaatggagaggatccttaatcgtt 598  Q
    |||||||| |||| |||| ||||||||||||| ||||||||||  |||||||| |||||    
T  44517675 tctctttccaaattatatactccatttattttgataaatggaggagatccttactcgtt 44517617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 2e-33; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 37599896 - 37599763
Alignment:
Q  7 aattatcagtgtaaatgcttatgaatgattgttgtgcatcaaagaacattgctattgctacaagaacagcttgtaagaaatccatccacccaaaatttga 106  Q
    |||||||||||||||||||||| ||||| | |||||||||||||||||| || |||||||||||||||||||| || |||||||| || |||||||||||    
T  37599896 aattatcagtgtaaatgcttataaatgactcttgtgcatcaaagaacatagcaattgctacaagaacagcttgaaataaatccattcaaccaaaatttga 37599797  T
Q  107 taaacttttttctatgattacatcccatgataac 140  Q
    ||||    ||||||| ||| ||||||||||||||    
T  37599796 taaaaaaatttctataatttcatcccatgataac 37599763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 535 - 588
Target Start/End: Complemental strand, 26332992 - 26332939
Alignment:
Q  535 gtatctctctttctaaatgatattctccatttatttttataaatggagaggatc 588  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26332992 gtatatctctttctaaatgacattctccatttatttttataaatggagaggatc 26332939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 542 - 592
Target Start/End: Original strand, 3326582 - 3326632
Alignment:
Q  542 tctttctaaatgatattctccatttatttttataaatggagaggatcctta 592  Q
    |||||||||||| ||| || | |||||||| ||||||||||||||||||||    
T  3326582 tctttctaaatggtatccttcgtttattttcataaatggagaggatcctta 3326632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 560 - 598
Target Start/End: Original strand, 9608043 - 9608081
Alignment:
Q  560 tccatttatttttataaatggagaggatccttaatcgtt 598  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  9608043 tccatttatttttataaatggagaggatctttaaccgtt 9608081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 540 - 578
Target Start/End: Complemental strand, 25442188 - 25442150
Alignment:
Q  540 tctctttctaaatgatattctccatttatttttataaat 578  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  25442188 tctctttctaaatgacatactccatttatttttataaat 25442150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 558 - 592
Target Start/End: Complemental strand, 28701736 - 28701702
Alignment:
Q  558 tctccatttatttttataaatggagaggatcctta 592  Q
    ||||||||| |||||||||||||||||||||||||    
T  28701736 tctccatttgtttttataaatggagaggatcctta 28701702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 10403944 - 10403887
Alignment:
Q  15 gtgtaaatgcttatgaatgattgttgtgcatcaaagaacattgctattgctacaagaa 72  Q
    ||||||||  ||||||||||||||||||| || ||||||||||| | || ||||||||    
T  10403944 gtgtaaattgttatgaatgattgttgtgcgtcgaagaacattgcgaatgatacaagaa 10403887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 3e-23; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 210 - 289
Target Start/End: Complemental strand, 29678948 - 29678868
Alignment:
Q  210 gctattactaaaagccaataaaattattcttatagaaag-atcaataaaattattaataagaaaatccaaacgactacaca 289  Q
    |||| |||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||| |||||||||||||||    
T  29678948 gctactactaaaagccaataaaattattcttatagaaagaattaatataattattaataagaaaacccaaacgactacaca 29678868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 540 - 592
Target Start/End: Complemental strand, 11828915 - 11828863
Alignment:
Q  540 tctctttctaaatgatattctccatttatttttataaatggagaggatcctta 592  Q
    ||||||||||||||  |||||||||||||||||||||| ||||||||||||||    
T  11828915 tctctttctaaatggcattctccatttatttttataaacggagaggatcctta 11828863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 540 - 588
Target Start/End: Complemental strand, 47271018 - 47270970
Alignment:
Q  540 tctctttctaaatgatattctccatttatttttataaatggagaggatc 588  Q
    ||||| ||||||||| ||||| |||||||||||||||||||||||||||    
T  47271018 tctctatctaaatgacattcttcatttatttttataaatggagaggatc 47270970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 540 - 588
Target Start/End: Original strand, 40143567 - 40143615
Alignment:
Q  540 tctctttctaaatgatattctccatttatttttataaatggagaggatc 588  Q
    |||||||| |||| ||||  |||||||||||||||||||||||||||||    
T  40143567 tctctttccaaattatatcttccatttatttttataaatggagaggatc 40143615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 540 - 592
Target Start/End: Complemental strand, 46823416 - 46823364
Alignment:
Q  540 tctctttctaaatgatattctccatttatttttataaatggagaggatcctta 592  Q
    ||||||||||||||  | |||| ||||||||||||||||| ||||||||||||    
T  46823416 tctctttctaaatgtcaatctctatttatttttataaatgtagaggatcctta 46823364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 540 - 588
Target Start/End: Complemental strand, 47456643 - 47456595
Alignment:
Q  540 tctctttctaaatgatattctccatttatttttataaatggagaggatc 588  Q
    ||||||| ||||||| ||||||||||||||||| |||||||||| ||||    
T  47456643 tctctttttaaatgacattctccatttatttttgtaaatggagatgatc 47456595  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 540 - 591
Target Start/End: Original strand, 25656911 - 25656962
Alignment:
Q  540 tctctttctaaatgatattctccatttatttttataaatggagaggatcctt 591  Q
    ||||||| |||| || | |||||||||||||||||||||||||| |||||||    
T  25656911 tctctttataaaagagaatctccatttatttttataaatggagaagatcctt 25656962  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 558 - 588
Target Start/End: Complemental strand, 27386932 - 27386902
Alignment:
Q  558 tctccatttatttttataaatggagaggatc 588  Q
    |||||||||||||||||||||||||||||||    
T  27386932 tctccatttatttttataaatggagaggatc 27386902  T

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Target: chr2 (Bit Score: 45; Significance: 4e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 540 - 592
Target Start/End: Original strand, 12949559 - 12949611
Alignment:
Q  540 tctctttctaaatgatattctccatttatttttataaatggagaggatcctta 592  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  12949559 tctctttctaaatggtatcctccatttatttttataaatggagaggatcctta 12949611  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 528 - 588
Target Start/End: Original strand, 2522541 - 2522601
Alignment:
Q  528 tttgtgagtatctctctttctaaatgatattctccatttatttttataaatggagaggatc 588  Q
    |||||| |||||||||||||||||||  || ||||||||||||||||||||| ||||||||    
T  2522541 tttgtgtgtatctctctttctaaatggcatgctccatttatttttataaatgaagaggatc 2522601  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 540 - 590
Target Start/End: Complemental strand, 45446616 - 45446566
Alignment:
Q  540 tctctttctaaatgatattctccatttatttttataaatggagaggatcct 590  Q
    ||||||||||||||  | |||||||||||||||||||||||||||||||||    
T  45446616 tctctttctaaatggcaatctccatttatttttataaatggagaggatcct 45446566  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 542 - 590
Target Start/End: Complemental strand, 2358403 - 2358355
Alignment:
Q  542 tctttctaaatgatattctccatttatttttataaatggagaggatcct 590  Q
    ||||||||||||| ||| ||||||||||||||||||| ||||| |||||    
T  2358403 tctttctaaatgagattttccatttatttttataaatagagagtatcct 2358355  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 558 - 588
Target Start/End: Complemental strand, 373158 - 373128
Alignment:
Q  558 tctccatttatttttataaatggagaggatc 588  Q
    |||||||||||||||||||||||||||||||    
T  373158 tctccatttatttttataaatggagaggatc 373128  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 542 - 592
Target Start/End: Complemental strand, 24339374 - 24339324
Alignment:
Q  542 tctttctaaatgatattctccatttatttttataaatggagaggatcctta 592  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  24339374 tctttctaaataacattctccatttatttttataaatggagaggatcctta 24339324  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 541 - 590
Target Start/End: Original strand, 44483830 - 44483879
Alignment:
Q  541 ctctttctaaatgatattctccatttatttttataaatggagaggatcct 590  Q
    |||||||||||||  || ||||||| ||||||||||||||||||||||||    
T  44483830 ctctttctaaatggcatcctccattaatttttataaatggagaggatcct 44483879  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 544 - 588
Target Start/End: Original strand, 39426044 - 39426088
Alignment:
Q  544 tttctaaatgatattctccatttatttttataaatggagaggatc 588  Q
    ||||||||||| |||||| ||||||||||||||||||||| ||||    
T  39426044 tttctaaatgacattctctatttatttttataaatggagaagatc 39426088  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 540 - 579
Target Start/End: Original strand, 10778062 - 10778101
Alignment:
Q  540 tctctttctaaatgatattctccatttatttttataaatg 579  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  10778062 tctctttctaaatgataatctccatttgtttttataaatg 10778101  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 540 - 591
Target Start/End: Complemental strand, 46608391 - 46608340
Alignment:
Q  540 tctctttctaaatgatattctccatttatttttataaatggagaggatcctt 591  Q
    ||||||||||||||  || |||| |||||||| |||||||||||||||||||    
T  46608391 tctctttctaaatggcatcctccctttattttcataaatggagaggatcctt 46608340  T

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Target: scaffold0252 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 542 - 588
Target Start/End: Complemental strand, 10484 - 10438
Alignment:
Q  542 tctttctaaatgatattctccatttatttttataaatggagaggatc 588  Q
    ||||| |||||  ||||||||||||||||| ||||||||||||||||    
T  10484 tctttttaaattgtattctccatttattttgataaatggagaggatc 10438  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 559 - 592
Target Start/End: Original strand, 246312 - 246345
Alignment:
Q  559 ctccatttatttttataaatggagaggatcctta 592  Q
    ||||||||||||| ||||||||||||||||||||    
T  246312 ctccatttattttgataaatggagaggatcctta 246345  T

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