View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4652-Insertion-3 (Length: 682)
Name: NF4652-Insertion-3
Description: NF4652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4652-Insertion-3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 8 - 585
Target Start/End: Original strand, 32376465 - 32377014
Alignment:
| Q |
8 |
tatgtcaacataatcatgagcagaaacattattaatatgtaaaatagccatatcaatggtcaaataatgtataaaaataacatcattattatctcccacc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32376465 |
tatgtcaacataatcatgagcagaaacattattaatacgtaaaatagccatatcaatggtcaaataatgtataaaaataacatcattattatctcccacc |
32376564 |
T |
|
| Q |
108 |
ttataatattttactttcttcaaataaatcttttcgaatatgaatatatttactgaatactcgcttaataggtttctcatgtaaaattcatcatgcttta |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32376565 |
ttataatattttactttcttcaaataaatcttttcgaatatgaatatatttactgaatactcgcttaataggtttctcatgtaaaattcgtcatgcttta |
32376664 |
T |
|
| Q |
208 |
aactaatcatattatgtttataagtataacaagtgtggctaatactttgacaatacaaacagacaagaggaataatttcatatccaacattaacaagaaa |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32376665 |
aactaatcatattatgtttataagtataaaaagtgtggctaatactttgacaatacaaacatacaagaggaataatttcatatccaacattaacaagaaa |
32376764 |
T |
|
| Q |
308 |
agtgtaacccgttccacccaacctttgtttctcatttttgccaataaatcaatatcttaaaattcatgcaaaatgactaaaagatatagaaagagatgac |
407 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32376765 |
agtgt--------------aacctttgtttctcatttttgccaataaatcaatatcttaaaattcatgcaaaatgactaaaagatatagaaagagatgac |
32376850 |
T |
|
| Q |
408 |
ttacttgtaacaacatccaaacccacccttgttccgaggcaaatagtaattgcaaaaagaatttttgaacgtcattgttcttgaagcaatcccatagcaa |
507 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32376851 |
ttacttgtaacaacatccaaactcacccttgttccgaggcaaatagtaattgcaaaaagaatttttgaacgtcattgttcttgaagcaatcccatagcaa |
32376950 |
T |
|
| Q |
508 |
gaatccaacattgcaccgttgaccattttaaagatcttcaatggcaaataaaagttcaaaaaatcctttttctaaaga |
585 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32376951 |
gaatccaaca--------------attttaaagatcttcaatggcaaataaaagttcataaaatcctttttctaaaga |
32377014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 584 - 682
Target Start/End: Original strand, 32377103 - 32377201
Alignment:
| Q |
584 |
gataccaaaccttcttgaagatgaatcttgcatgcatccattccaactttgagaaataacacaagcattgattaaaagttaagcaaaggactttagttg |
682 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32377103 |
gataccaaacctccttgaagatgattcttgcatgcatccattccaactttgagaaataacacaagcattgattaaaagttaagcaaaggactttagttg |
32377201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University