View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4652-Insertion-5 (Length: 544)
Name: NF4652-Insertion-5
Description: NF4652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4652-Insertion-5 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 7 - 544
Target Start/End: Original strand, 34455485 - 34456022
Alignment:
| Q |
7 |
agaaaataatgacaaacttgaaaacaataataacgatggactaattgaaatgccgtaaattgatgaatcatctaaagatagcaagttccaagtaggacac |
106 |
Q |
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| T |
34455485 |
agaaaataatgacaaacttgaaaacaataataacgatggactaattgaaatgccgtaaattgatgaatcatctaaagatagcaagttccaagtaggacac |
34455584 |
T |
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| Q |
107 |
gagatttggaaaggaaagnnnnnnnnnnnnnnnnnnaggaagatccaagaataagacaacgaatccacatttcaacattgccatgaatctgaaccaaaaa |
206 |
Q |
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| T |
34455585 |
gagatttggaaaggaaagttttttttttttttt---aggaagaaccaagaataagacaatgaatccacatttcaacattgccatgaatctgaaccagaga |
34455681 |
T |
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| Q |
207 |
ataatcaaactcttaaggaaaggaaatgtaagtctatcctgacatagatgatcccatagccgtcagttcatttaatggattttatgtcgttaaccaaaga |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34455682 |
ataatcaaactcttaaggaaaggaaatgtaagtctatcctgacatagatgatcccatagccgtcagttgatttaatggattttatgtcgttaaccaaaga |
34455781 |
T |
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| Q |
307 |
tggagac--atacgcaaaggatatacgaagttatatttgaagcataggaagtattcaatcgattaagaggaaccattggatgagaagttatttaagtctg |
404 |
Q |
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| T |
34455782 |
tggagacatatacgtaaaggatatacgaagttatatttgaagcatacgaattatacaatcgattaagaggaaccattggatgagaagttatttaagtttg |
34455881 |
T |
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| Q |
405 |
atgccaacacaactttctctaacttgtctgaacttac-ttgaaatcttgatactaaaccaattttacaaaccttaatttagaatttcattgaatttaaga |
503 |
Q |
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| T |
34455882 |
atgccaacacaactttctctaacttgtctgaacttactttgaaatcttgatactaaaccaattttacaaaccttaatttagaatttctgtgaatttaaga |
34455981 |
T |
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| Q |
504 |
atgttcgaaactaagtgtggtctctgtgtttcaatacaata |
544 |
Q |
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| T |
34455982 |
atgtacgaaactaagtgtggtctctatgtttcaatacaata |
34456022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 413 - 531
Target Start/End: Original strand, 32268530 - 32268648
Alignment:
| Q |
413 |
acaactttctctaacttgtctgaacttacttgaaatcttgatactaaaccaattttacaaaccttaatttagaatttcattgaatttaagaatgttcgaa |
512 |
Q |
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| T |
32268530 |
acaactttatataacttgtcttaacttaattgcaatcctgccaccaaaccaattttacaaaccttaatttagaattcctgtgaatttaagaacgatcgaa |
32268629 |
T |
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| Q |
513 |
actaagtgtggtctctgtg |
531 |
Q |
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| T |
32268630 |
actaagcgcggtctttgtg |
32268648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 360 - 531
Target Start/End: Complemental strand, 29020346 - 29020175
Alignment:
| Q |
360 |
caatcgattaagaggaaccattggatgagaagttatttaagtctgatgccaacacaactttctctaacttgtctgaacttacttgaaatcttgatactaa |
459 |
Q |
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||||||||||||||||||||||||||| ||| |||| ||||||| || |||||||||||||||||||||||||| ||||| |||| |||| || ||| || |
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| T |
29020346 |
caatcgattaagaggaaccattggatgtgaaattatctaagtctaatcccaacacaactttctctaacttgtcttaacttgcttgcaatcctgctaccaa |
29020247 |
T |
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| Q |
460 |
accaattttacaaaccttaatttagaatttcattgaatttaagaatgttcgaaactaagtgtggtctctgtg |
531 |
Q |
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| T |
29020246 |
aacaattttacaaaccttaatttagaatttcagtgaatttaagaatgattgaaactaagcgtggtctatgtg |
29020175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 380
Target Start/End: Original strand, 1467830 - 1467877
Alignment:
| Q |
333 |
agttatatttgaagcataggaagtattcaatcgattaagaggaaccat |
380 |
Q |
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| T |
1467830 |
agttatatttgaggcataaaaagtatacaatcgattaagaggaaccat |
1467877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 361 - 429
Target Start/End: Complemental strand, 13002265 - 13002197
Alignment:
| Q |
361 |
aatcgattaagaggaaccattggatgagaagttatttaagtctgatgccaacacaactttctctaactt |
429 |
Q |
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| T |
13002265 |
aatcgattaagaggaaccattggatgagaagttatctaagtctaattccaacacaactttctcaaactt |
13002197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 361 - 429
Target Start/End: Complemental strand, 13076923 - 13076855
Alignment:
| Q |
361 |
aatcgattaagaggaaccattggatgagaagttatttaagtctgatgccaacacaactttctctaactt |
429 |
Q |
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| T |
13076923 |
aatcgattaagaggaaccattagatgagaagttatctaagtctaattccaacacaactttctcaaactt |
13076855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 244
Target Start/End: Original strand, 30158758 - 30158832
Alignment:
| Q |
170 |
tccacatttcaacattgccatgaatctgaaccaaaaaataatcaaactcttaaggaaaggaaatgtaagtctatc |
244 |
Q |
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| T |
30158758 |
tccacatctcaacactgccatgaatctgaaccaggtaatgatcaacctcctaagaaaaggaaaggtaagtctatc |
30158832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 377
Target Start/End: Complemental strand, 11222658 - 11222612
Alignment:
| Q |
331 |
gaagttatatttgaagcataggaagtattcaatcgattaagaggaac |
377 |
Q |
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| T |
11222658 |
gaagttatatttgaagcataaatagtatacaatcgattaagaggaac |
11222612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 373
Target Start/End: Complemental strand, 8717750 - 8717708
Alignment:
| Q |
331 |
gaagttatatttgaagcataggaagtattcaatcgattaagag |
373 |
Q |
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| T |
8717750 |
gaagttatatttgaagcataaaaagtatacaatcgattaagag |
8717708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 531
Target Start/End: Complemental strand, 24808417 - 24808365
Alignment:
| Q |
479 |
atttagaatttcattgaatttaagaatgttcgaaactaagtgtggtctctgtg |
531 |
Q |
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| T |
24808417 |
atttagaatttctgcgaatttaagaatggtctaaactaaatgtggtctctgtg |
24808365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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