View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4652-Insertion-6 (Length: 518)
Name: NF4652-Insertion-6
Description: NF4652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4652-Insertion-6 |
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Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 6 - 496
Target Start/End: Original strand, 39090167 - 39090660
Alignment:
| Q |
6 |
caatgatgataaacaatttgggtcggctctaaatgcagcccgtcaagcggatgctactgttctagtgatgggattggatcagtcaattgaggctgaaatg |
105 |
Q |
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| T |
39090167 |
caatgatgataaacaatttgggtcggctctaaatgcagcccgtcaagcggatgctactgttctagtgatgggattggatcagtcaattgaggctgaaatg |
39090266 |
T |
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| Q |
106 |
gtagataggactggtttacttcttcctggacatcaacaagaccttgtttcaaaggtagcggctgcctcgagaggcccaaccattttggtcttaatgtctg |
205 |
Q |
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| T |
39090267 |
gtagataggactggtttacttcttcctggacatcaacaagaccttgtttcaaaggtagcggctgcctcgagaggcccaaccattttggtcttaatgtctg |
39090366 |
T |
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| Q |
206 |
gtggtcctatagatataacttttgcaaagaatgatcctcgaattataggcatcttgtgggctggttatcctggtcaagccggtggtgctgccattgcgga |
305 |
Q |
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| T |
39090367 |
gtgggcctatagatataacttttgcaaagaatgatcctcgaattatgggcattttgtgggctggttatcctggtcaagccggtggtgctgccattgcgga |
39090466 |
T |
|
| Q |
306 |
tatattgtttggaaccgctaacccaggtttgtaatgaatctattctttttaagggag---cttttcacctacgattcttaaaaatcgttccagtctggat |
402 |
Q |
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| T |
39090467 |
tatattgtttggaaccactaacccaggtttgtaatgaatctatcctttttaagggagcttcttttcacctacgattcttaaaaatcgttccagtccggat |
39090566 |
T |
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| Q |
403 |
tcacccaactgaacacaagaaaaatcattatcttatatgtctttatccatctagaggagcgacgatttaagaaattgttggggctaaatgtaac |
496 |
Q |
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| T |
39090567 |
ttacccaactggacacaagaaaaaacattatcttatatgtctttatccatttagaggagcgtcaatttaagaaattgttggggctaaatgtaac |
39090660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 10 - 337
Target Start/End: Complemental strand, 44715248 - 44714921
Alignment:
| Q |
10 |
gatgataaacaatttgggtcggctctaaatgcagcccgtcaagcggatgctactgttctagtgatgggattggatcagtcaattgaggctgaaatggtag |
109 |
Q |
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| T |
44715248 |
gatgataaacaatttggacctgccctggatgcagctcgtcatgcagatgcaactattttagtgataggcttggaccaatccattgaagctgaaactgttg |
44715149 |
T |
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| Q |
110 |
ataggactggtttacttcttcctggacatcaacaagaccttgtttcaaaggtagcggctgcctcgagaggcccaaccattttggtcttaatgtctggtgg |
209 |
Q |
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| T |
44715148 |
ataggactagcttgcttttgcctggacatcaacaagatcttgtttcaaaggtggcagctgcatcaaagggaccaactattttggttttgatgtctggtgg |
44715049 |
T |
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| Q |
210 |
tcctatagatataacttttgcaaagaatgatcctcgaattataggcatcttgtgggctggttatcctggtcaagccggtggtgctgccattgcggatata |
309 |
Q |
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| T |
44715048 |
gcctgtggacattacttttgcaaagaatgaccccaaagttgctggcatattgtgggcgggttatccaggccaagctggtggtgctgcaattgctgacatt |
44714949 |
T |
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| Q |
310 |
ttgtttggaaccgctaacccaggtttgt |
337 |
Q |
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| T |
44714948 |
ttatttggaactgctagcccaggtttgt |
44714921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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