View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4652-Insertion-7 (Length: 507)

Name: NF4652-Insertion-7
Description: NF4652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4652-Insertion-7
NF4652-Insertion-7
[»] chr1 (7 HSPs)
chr1 (100-507)||(15591207-15591615)
chr1 (7-100)||(15590876-15590969)
chr1 (136-222)||(16008987-16009073)
chr1 (136-176)||(10129974-10130014)
chr1 (136-217)||(15998799-15998881)
chr1 (136-176)||(19490087-19490127)
chr1 (137-165)||(15603309-15603337)
[»] chr8 (2 HSPs)
chr8 (313-384)||(35445668-35445739)
chr8 (140-176)||(13904719-13904755)
[»] chr6 (21 HSPs)
chr6 (134-176)||(24730690-24730732)
chr6 (136-176)||(29882272-29882312)
chr6 (136-176)||(29909428-29909468)
chr6 (136-176)||(29929110-29929150)
chr6 (136-176)||(29946274-29946314)
chr6 (136-176)||(30053264-30053304)
chr6 (136-176)||(30154337-30154377)
chr6 (133-176)||(24890368-24890411)
chr6 (133-176)||(31000060-31000103)
chr6 (131-176)||(30149359-30149404)
chr6 (140-176)||(16702268-16702304)
chr6 (136-176)||(21160747-21160787)
chr6 (136-176)||(24739317-24739357)
chr6 (137-176)||(24897915-24897954)
chr6 (138-172)||(24263878-24263912)
chr6 (131-176)||(29950019-29950064)
chr6 (140-176)||(15715108-15715144)
chr6 (136-172)||(24272073-24272109)
chr6 (136-176)||(24942037-24942077)
chr6 (136-176)||(29876662-29876702)
chr6 (136-176)||(29953816-29953856)
[»] scaffold0237 (1 HSPs)
scaffold0237 (131-176)||(22175-22220)
[»] chr3 (4 HSPs)
chr3 (136-176)||(24226657-24226697)
chr3 (136-176)||(24219357-24219397)
chr3 (137-176)||(11991150-11991189)
chr3 (129-168)||(16350880-16350919)
[»] scaffold0014 (3 HSPs)
scaffold0014 (136-176)||(140135-140175)
scaffold0014 (129-168)||(137204-137243)
scaffold0014 (140-176)||(121593-121629)
[»] chr2 (2 HSPs)
chr2 (136-176)||(15062998-15063038)
chr2 (35-74)||(12250131-12250170)
[»] scaffold0051 (2 HSPs)
scaffold0051 (129-168)||(43415-43454)
scaffold0051 (136-168)||(48033-48065)
[»] chr5 (1 HSPs)
chr5 (136-182)||(20888572-20888618)
[»] scaffold0086 (1 HSPs)
scaffold0086 (131-176)||(31427-31472)
[»] scaffold0054 (1 HSPs)
scaffold0054 (131-172)||(53722-53763)
[»] scaffold0654 (1 HSPs)
scaffold0654 (140-176)||(1342-1378)
[»] scaffold0652 (1 HSPs)
scaffold0652 (140-176)||(1408-1444)
[»] scaffold0019 (1 HSPs)
scaffold0019 (136-168)||(126253-126285)


Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 100 - 507
Target Start/End: Original strand, 15591207 - 15591615
Alignment:
Q  100 atcaggtggtctaaagggagtaacgcttaataataccatgattaatggattatgtaagattaaaatggtggatgaagttatgaatttgaggaagaaatgt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15591207 atcaggtggtctaaagggagtaacgcttaataataccatgattaatggattatgtaagattaaaatagtggatgaagttatgaatttgaggaagaaatgt 15591306  T
Q  200 attccaaaaatatgattcctaatgccgagaaattcatcagagag-ccagttgtatagaagagggcgttgatctctcaaactaaatgatacatcagtttct 298  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15591307 attccaaaaatatgattcctaatgtcgagaaattcatcagagagtccagttgtagagaagagggcgttgatctctcaaactaaatgatacatcagtttct 15591406  T
Q  299 acaaggagagctgatgatgattctatgcaaaatcttagccagatcagcaactcctttgagaaaactttgggccttatccatcagctttaccaccttaccg 398  Q
    |||||  |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  15591407 acaag--gagctgatgatgattctacgcaaaatctgagccagatcagcaactcctttgagaaaacgttcggccttatccatcagctttaccaccttaccg 15591504  T
Q  399 tctccaccttgaacgttgtcttttaaatgtcactgca--ttttttataggtctttgtcttaacggtgatgatcaaaataccctgcactttcataatgact 496  Q
    ||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  15591505 tctccaccttgaacgttgtctttcaaatgtcactgcattttttttataggtctttgtcttaacggtgatgatcagaataccctgcactttcatgatgact 15591604  T
Q  497 agcaaagcaat 507  Q
    |||||||||||    
T  15591605 agcaaagcaat 15591615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 15590876 - 15590969
Alignment:
Q  7 atttgtgtcatacaaaagtagctgctttaaatttgttgcattttgcacaagcctcttcaaggtggtttttctcattaaatgcaattctgtggga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15590876 atttgtgtcatacaaaagtagctgctttaaatttgttgcattttgcacaagcctcttcaaggtggtttttctcattaaatgcaattccgtggga 15590969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 16009073 - 16008987
Alignment:
Q  136 catgattaatggattatgtaagattaaaatggtggatgaagttatgaatttgaggaagaaatgtattccaaaaatatgattcctaat 222  Q
    ||||||||||||||||||||||||||| || || ||||||| | ||||| |     |||||||||||||||||||||||||||||||    
T  16009073 catgattaatggattatgtaagattaacattgtagatgaagctttgaatctctttgagaaatgtattccaaaaatatgattcctaat 16008987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 10129974 - 10130014
Alignment:
Q  136 catgattaatggattatgtaagattaaaatggtggatgaag 176  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  10129974 catgattaatggattttgtaagattaaaatggtggatgaag 10130014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 217
Target Start/End: Complemental strand, 15998881 - 15998799
Alignment:
Q  136 catgattaatggattatgtaagattaaaatggtggatgaagttatgaat-ttgaggaagaaatgtattccaaaaatatgattc 217  Q
    ||||||||||| |||||||||||||||||| ||||||||| |  ||||| |    ||||||||||||||||||||| ||||||    
T  15998881 catgattaatgaattatgtaagattaaaatagtggatgaaatcgtgaatgtctttgaagaaatgtattccaaaaatttgattc 15998799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 19490087 - 19490127
Alignment:
Q  136 catgattaatggattatgtaagattaaaatggtggatgaag 176  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  19490087 catgattaatggattatgtaagatgaaaatgttggatgaag 19490127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 137 - 165
Target Start/End: Original strand, 15603309 - 15603337
Alignment:
Q  137 atgattaatggattatgtaagattaaaat 165  Q
    |||||||||||||||||||||||||||||    
T  15603309 atgattaatggattatgtaagattaaaat 15603337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 313 - 384
Target Start/End: Complemental strand, 35445739 - 35445668
Alignment:
Q  313 tgatgattctatgcaaaatcttagccagatcagcaactcctttgagaaaactttgggccttatccatcagct 384  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||||  ||||||| |||||||||||    
T  35445739 tgatgattctatgcaaaaccttagccagatcagcaactccattgagaaaaccctgggcctcatccatcagct 35445668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 176
Target Start/End: Complemental strand, 13904755 - 13904719
Alignment:
Q  140 attaatggattatgtaagattaaaatggtggatgaag 176  Q
    |||||||| |||||||||||||||||||| |||||||    
T  13904755 attaatggcttatgtaagattaaaatggttgatgaag 13904719  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 134 - 176
Target Start/End: Original strand, 24730690 - 24730732
Alignment:
Q  134 accatgattaatggattatgtaagattaaaatggtggatgaag 176  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  24730690 accatgattaatggattatgtaagattaaaatggtggatgaag 24730732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 29882272 - 29882312
Alignment:
Q  136 catgattaatggattatgtaagattaaaatggtggatgaag 176  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  29882272 catgattaatggattttgtaagattaaaatggtggatgaag 29882312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 29909428 - 29909468
Alignment:
Q  136 catgattaatggattatgtaagattaaaatggtggatgaag 176  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  29909428 catgattaatggattttgtaagattaaaatggtggatgaag 29909468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 29929110 - 29929150
Alignment:
Q  136 catgattaatggattatgtaagattaaaatggtggatgaag 176  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  29929110 catgattaatggattttgtaagattaaaatggtggatgaag 29929150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 29946274 - 29946314
Alignment:
Q  136 catgattaatggattatgtaagattaaaatggtggatgaag 176  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  29946274 catgattaatggattttgtaagattaaaatggtggatgaag 29946314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 30053264 - 30053304
Alignment:
Q  136 catgattaatggattatgtaagattaaaatggtggatgaag 176  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  30053264 catgattaatggattatgtaagaataaaatggtggatgaag 30053304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 30154337 - 30154377
Alignment:
Q  136 catgattaatggattatgtaagattaaaatggtggatgaag 176  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  30154337 catgattaatggattatgtaaggttaaaatggtggatgaag 30154377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 24890411 - 24890368
Alignment:
Q  133 taccatgattaatggattatgtaagattaaaatggtggatgaag 176  Q
    ||||||| |||||||||| |||||||||||||||||||||||||    
T  24890411 taccatggttaatggattttgtaagattaaaatggtggatgaag 24890368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 31000103 - 31000060
Alignment:
Q  133 taccatgattaatggattatgtaagattaaaatggtggatgaag 176  Q
    |||||||||||||||||| || ||||||||||||||||||||||    
T  31000103 taccatgattaatggattttgcaagattaaaatggtggatgaag 31000060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 30149359 - 30149404
Alignment:
Q  131 aataccatgattaatggattatgtaagattaaaatggtggatgaag 176  Q
    |||| ||||||||| ||||||||||||| |||||||||||||||||    
T  30149359 aatatcatgattaacggattatgtaagaataaaatggtggatgaag 30149404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 176
Target Start/End: Complemental strand, 16702304 - 16702268
Alignment:
Q  140 attaatggattatgtaagattaaaatggtggatgaag 176  Q
    ||||||||||||||||||||||||||||| |||||||    
T  16702304 attaatggattatgtaagattaaaatggttgatgaag 16702268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 21160787 - 21160747
Alignment:
Q  136 catgattaatggattatgtaagattaaaatggtggatgaag 176  Q
    ||||||||||||| ||||||||| |||||||||||||||||    
T  21160787 catgattaatggactatgtaagaataaaatggtggatgaag 21160747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 24739357 - 24739317
Alignment:
Q  136 catgattaatggattatgtaagattaaaatggtggatgaag 176  Q
    ||||||||||||| ||||||||| |||||||||||||||||    
T  24739357 catgattaatggactatgtaagactaaaatggtggatgaag 24739317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 176
Target Start/End: Original strand, 24897915 - 24897954
Alignment:
Q  137 atgattaatggattatgtaagattaaaatggtggatgaag 176  Q
    |||||||| ||||||||||||| |||||||||||||||||    
T  24897915 atgattaacggattatgtaagaataaaatggtggatgaag 24897954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 24263912 - 24263878
Alignment:
Q  138 tgattaatggattatgtaagattaaaatggtggat 172  Q
    ||||||||||||| |||||||||||||||||||||    
T  24263912 tgattaatggattttgtaagattaaaatggtggat 24263878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 29950064 - 29950019
Alignment:
Q  131 aataccatgattaatggattatgtaagattaaaatggtggatgaag 176  Q
    |||| ||||||||| ||||||||||||| |||||||||| ||||||    
T  29950064 aatatcatgattaacggattatgtaagaataaaatggtgaatgaag 29950019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 176
Target Start/End: Complemental strand, 15715144 - 15715108
Alignment:
Q  140 attaatggattatgtaagattaaaatggtggatgaag 176  Q
    |||||||| |||||||||||||||||||| |||||||    
T  15715144 attaatggcttatgtaagattaaaatggttgatgaag 15715108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 24272109 - 24272073
Alignment:
Q  136 catgattaatggattatgtaagattaaaatggtggat 172  Q
    |||||||||| |||| |||||||||||||||||||||    
T  24272109 catgattaatagattttgtaagattaaaatggtggat 24272073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 24942037 - 24942077
Alignment:
Q  136 catgattaatggattatgtaagattaaaatggtggatgaag 176  Q
    |||||| | |||||||||||||| |||||||||||||||||    
T  24942037 catgataactggattatgtaagaataaaatggtggatgaag 24942077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 29876662 - 29876702
Alignment:
Q  136 catgattaatggattatgtaagattaaaatggtggatgaag 176  Q
    ||||||||||||||| |||||| |||||||| |||||||||    
T  29876662 catgattaatggattttgtaaggttaaaatgatggatgaag 29876702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 29953856 - 29953816
Alignment:
Q  136 catgattaatggattatgtaagattaaaatggtggatgaag 176  Q
    ||||||||| ||||||||||||| |||||||||| ||||||    
T  29953856 catgattaacggattatgtaagaataaaatggtgaatgaag 29953816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 22175 - 22220
Alignment:
Q  131 aataccatgattaatggattatgtaagattaaaatggtggatgaag 176  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||    
T  22175 aatatcatgattaatggattttgtaagattaaaatggtggatgaag 22220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 24226657 - 24226697
Alignment:
Q  136 catgattaatggattatgtaagattaaaatggtggatgaag 176  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  24226657 catgattaatggattatgtaagaataaaatggtggatgaag 24226697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 24219397 - 24219357
Alignment:
Q  136 catgattaatggattatgtaagattaaaatggtggatgaag 176  Q
    |||||||| |||||| |||||||||||||||||||||||||    
T  24219397 catgattagtggattttgtaagattaaaatggtggatgaag 24219357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 176
Target Start/End: Original strand, 11991150 - 11991189
Alignment:
Q  137 atgattaatggattatgtaagattaaaatggtggatgaag 176  Q
    |||||||||||||| ||||||||||||||||| |||||||    
T  11991150 atgattaatggattttgtaagattaaaatggttgatgaag 11991189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 16350880 - 16350919
Alignment:
Q  129 ataataccatgattaatggattatgtaagattaaaatggt 168  Q
    |||||| ||||||||||||||| |||||||||||||||||    
T  16350880 ataatatcatgattaatggattctgtaagattaaaatggt 16350919  T

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Target: scaffold0014 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 140135 - 140175
Alignment:
Q  136 catgattaatggattatgtaagattaaaatggtggatgaag 176  Q
    ||||||||||||||| ||||||||||||||||| |||||||    
T  140135 catgattaatggattttgtaagattaaaatggttgatgaag 140175  T

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Target: scaffold0014; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 137204 - 137243
Alignment:
Q  129 ataataccatgattaatggattatgtaagattaaaatggt 168  Q
    |||||| ||||||||||||||| |||||||||||||||||    
T  137204 ataatatcatgattaatggattctgtaagattaaaatggt 137243  T

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Target: scaffold0014; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 176
Target Start/End: Complemental strand, 121629 - 121593
Alignment:
Q  140 attaatggattatgtaagattaaaatggtggatgaag 176  Q
    |||||||| |||||||||||||||||||| |||||||    
T  121629 attaatggtttatgtaagattaaaatggttgatgaag 121593  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 15063038 - 15062998
Alignment:
Q  136 catgattaatggattatgtaagattaaaatggtggatgaag 176  Q
    ||||||||||||||| ||||||||||||||||| |||||||    
T  15063038 catgattaatggattttgtaagattaaaatggtagatgaag 15062998  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 74
Target Start/End: Original strand, 12250131 - 12250170
Alignment:
Q  35 aaatttgttgcattttgcacaagcctcttcaaggtggttt 74  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  12250131 aaatttgttgcattttgcacaaacctcttcaacgtggttt 12250170  T

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Target: scaffold0051 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 43454 - 43415
Alignment:
Q  129 ataataccatgattaatggattatgtaagattaaaatggt 168  Q
    |||||| ||||||||||||||| |||||||||||||||||    
T  43454 ataatatcatgattaatggattttgtaagattaaaatggt 43415  T

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Target: scaffold0051; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 48065 - 48033
Alignment:
Q  136 catgattaatggattatgtaagattaaaatggt 168  Q
    ||||||||||||||| |||||||||||||||||    
T  48065 catgattaatggattctgtaagattaaaatggt 48033  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 20888572 - 20888618
Alignment:
Q  136 catgattaatggattatgtaagattaaaatggtggatgaagttatga 182  Q
    ||||||||| | ||||| ||||| |||||||||||||||||||||||    
T  20888572 catgattaacgtattatataagaataaaatggtggatgaagttatga 20888618  T

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Target: scaffold0086 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 31472 - 31427
Alignment:
Q  131 aataccatgattaatggattatgtaagattaaaatggtggatgaag 176  Q
    |||| ||| |||||||||||||||||||||||||| || |||||||    
T  31472 aatatcattattaatggattatgtaagattaaaattgttgatgaag 31427  T

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Target: scaffold0054 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 53763 - 53722
Alignment:
Q  131 aataccatgattaatggattatgtaagattaaaatggtggat 172  Q
    |||| ||||||||||||||| ||||||||||||| |||||||    
T  53763 aatatcatgattaatggattttgtaagattaaaaaggtggat 53722  T

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Target: scaffold0654 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 176
Target Start/End: Complemental strand, 1378 - 1342
Alignment:
Q  140 attaatggattatgtaagattaaaatggtggatgaag 176  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  1378 attaatggattctgtaagattaaaatggtcgatgaag 1342  T

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Target: scaffold0652 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 176
Target Start/End: Complemental strand, 1444 - 1408
Alignment:
Q  140 attaatggattatgtaagattaaaatggtggatgaag 176  Q
    |||||||| |||||||||||||||||||| |||||||    
T  1444 attaatggtttatgtaagattaaaatggttgatgaag 1408  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 126285 - 126253
Alignment:
Q  136 catgattaatggattatgtaagattaaaatggt 168  Q
    |||||||||||||||||||||| ||||||||||    
T  126285 catgattaatggattatgtaaggttaaaatggt 126253  T

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