View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4652-Insertion-8 (Length: 472)
Name: NF4652-Insertion-8
Description: NF4652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4652-Insertion-8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 58 - 472
Target Start/End: Complemental strand, 7538500 - 7538080
Alignment:
| Q |
58 |
tcactcaccataaccaaatatggcagagataatagtggcagctaacacacaagcacaagcatgcttgttgagatggtttacatccccacaagtgttttcc |
157 |
Q |
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| T |
7538500 |
tcactcaccataaccaaatatggcagagataatagtggcagctaacacacaagcacaagcatgcttgttgagatggtttacatccccacacgtgctttcc |
7538401 |
T |
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| Q |
158 |
atggatgatacttggctgtgcccatttgtttcttttccactagacaacattctttaacccaacttgtatatgatttttatagaattttagtgatgtcctt |
257 |
Q |
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| T |
7538400 |
atggatgatacttggctgtgcccatttgtttcttttccactagacaacattctttaacccaacttgtatatgatttttatagaattttagtgatgtcctt |
7538301 |
T |
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| Q |
258 |
tatatatagaaagagtgagtctttattttgtaaacagtcaatacactattccaacatgtagcattcatcaatttatataatttaaatttgttgactgttg |
357 |
Q |
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| T |
7538300 |
tatatatagaaagagtgagtctttattttgtaaacagtcaatacactattccaacatgtagcattcatcaatttatataatttaaatttgttgactgttg |
7538201 |
T |
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| Q |
358 |
aagtgagcaaatgttgtttaacttatagaattaaattgtctctaccctcactt------nnnnnnnnnnnnntattataagatacttgaacatatatttt |
451 |
Q |
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| T |
7538200 |
aagtgagcaaatgttgtttaacttatagaattaaattgtctctaccttcacttaaaaaaaatatatatatattattataagatacttgaacatatatttt |
7538101 |
T |
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| Q |
452 |
ttcatttgagcataaagcctc |
472 |
Q |
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| T |
7538100 |
ttcatttgagcataaagcctc |
7538080 |
T |
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