View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4652-Insertion-9 (Length: 450)
Name: NF4652-Insertion-9
Description: NF4652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4652-Insertion-9 |
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| [»] chr3 (4 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 8 - 450
Target Start/End: Original strand, 48138675 - 48139116
Alignment:
| Q |
8 |
attttctcaaattattaatcatgtcc-actgtgtcaatgtcgtgtctgtccgtgtatcacatgattaattacagacatactaatggatgcaatgcaacat |
106 |
Q |
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| T |
48138675 |
attttctcaaattattaaccatgtcccact-tgtcagtgtcgtgtctgtccctgtatcacatgattaattagagacatactaatggatgcaatgcaacat |
48138773 |
T |
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| Q |
107 |
tgtcatattttctattgtcatttactaaaatgttttttcgttttaacttgttaatattagtaagaaattgtgagattcttgaaataaatgtatttgtgat |
206 |
Q |
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| T |
48138774 |
tggcgtattttctattgtcatttactaaaatgttttttcgttttaacttgttaatattagtaagaaattgtgagattcttgaaataaatgtatttgtgat |
48138873 |
T |
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| Q |
207 |
ggagagatgatgaaatgctaactagagatgtaaaaatacgcacaattgttcactttaacagttcattatttccatgttaacaagtaaaattatttataga |
306 |
Q |
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| T |
48138874 |
ggagagatgatgaaatgctaactagagatgtaaaaatacgcacaattgttcactttaacagttcattatttccatgttaacaagtaaaattatttataga |
48138973 |
T |
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| Q |
307 |
atatgttttcatttgaaagagtgctaaatttgttgtttctatttatttataattggaatgccaaattatctgttggttatttttgcagattgaaaggcgt |
406 |
Q |
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| T |
48138974 |
atatgttttcatttgaaagagtgctaaatttgttgtttctattta-ttataattggaatgccaaattatctgttggttatttttgcagattgaaaggcgt |
48139072 |
T |
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| Q |
407 |
caatccgaatttggaaaggtcaaagatttattgactacaaacta |
450 |
Q |
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| T |
48139073 |
caatcggaatttggaaaggtcaaagatttattgactacaaacta |
48139116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 382 - 430
Target Start/End: Complemental strand, 48125828 - 48125780
Alignment:
| Q |
382 |
gttatttttgcagattgaaaggcgtcaatccgaatttggaaaggtcaaa |
430 |
Q |
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| T |
48125828 |
gttatttttgcaggttgaaaggcgtcaatctgaatttagaaaggtcaaa |
48125780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 440
Target Start/End: Complemental strand, 48135938 - 48135884
Alignment:
| Q |
386 |
tttttgcagattgaaaggcgtcaatccgaatttggaaaggtcaaagatttattga |
440 |
Q |
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| T |
48135938 |
tttttgcaggttgaaagccgtcaattagaattcggaaaggtcaaagatttattga |
48135884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 443
Target Start/End: Complemental strand, 48115760 - 48115700
Alignment:
| Q |
383 |
ttatttttgcagattgaaaggcgtcaatccgaatttggaaaggtcaaagatttattgacta |
443 |
Q |
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| T |
48115760 |
ttatttttgcaggttgaacggcatcaatcagaatttggaaaagtcaaaggattattgacta |
48115700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 8 - 450
Target Start/End: Original strand, 25251350 - 25251790
Alignment:
| Q |
8 |
attttctcaaattattaatcatgtccactgtgtcaatgtcgtgtctgtccgtgtatcacatgattaattacagacatactaatggatgcaatgcaacatt |
107 |
Q |
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| T |
25251350 |
attttctcaaattattaatcatgtccact-tgtcagtgtcgtgtctgtccgtgtatcacaggattggttagagacatactaatggatgcaatgcaacatt |
25251448 |
T |
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| Q |
108 |
gtcatattttctattgtcatttactaaaatgttttttcgttttaacttgttaatattagtaagaaattgtgagattcttgaaataaatgtatttgtgatg |
207 |
Q |
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| T |
25251449 |
ggcgtattttctattgtcatttactaaaatgttttttcgttttaacttgttaatattggtaagaaattgtgagattcttgaaataaatgtatttgtgatg |
25251548 |
T |
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| Q |
208 |
gagagatgatgaaatgctaactagagatgtaaaaatacgcacaattgttcactttaacagttcattatttccatgttaacaagtaaaattatttatagaa |
307 |
Q |
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| T |
25251549 |
gagagatgatgaaatgctaactagagatgtaaaaatacgcacaattgttcactttaacagttcattgtttccatgttaacaagtaaaattatttatagaa |
25251648 |
T |
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| Q |
308 |
tatgttttcatttgaaagagtgctaaatttgttgtttctatttatttataattggaatgccaaattatctgttggttatttttgcagattgaaaggcgtc |
407 |
Q |
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| T |
25251649 |
tatgttttcatttgaaacagtgataaatttgttgtttctattta-ttattattggaatgtcaaattatctgttggttatttttgcagattgaaaggcgtc |
25251747 |
T |
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| Q |
408 |
aatccgaatttggaaaggtcaaagatttattgactacaaacta |
450 |
Q |
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| T |
25251748 |
aatccgaatttggaaaggtcaaagatttattgactacaaacta |
25251790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 440
Target Start/End: Complemental strand, 25247916 - 25247862
Alignment:
| Q |
386 |
tttttgcagattgaaaggcgtcaatccgaatttggaaaggtcaaagatttattga |
440 |
Q |
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| T |
25247916 |
tttttgcaggttgaaagccgtcaattagaattcggaaaggtcaaagatttattga |
25247862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 382 - 450
Target Start/End: Original strand, 32022296 - 32022364
Alignment:
| Q |
382 |
gttatttttgcagattgaaaggcgtcaatccgaatttggaaaggtcaaagatttattgactacaaacta |
450 |
Q |
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| T |
32022296 |
gttatttttgcaggttgaaaggcgtcaatctgaattcggaaaggtcaaagaattattgagtagaaacta |
32022364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 432
Target Start/End: Original strand, 32010339 - 32010389
Alignment:
| Q |
382 |
gttatttttgcagattgaaaggcgtcaatccgaatttggaaaggtcaaaga |
432 |
Q |
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||||||||||||| |||||||||||||||| |||||| | ||| ||||||| |
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| T |
32010339 |
gttatttttgcaggttgaaaggcgtcaatctgaatttcggaagttcaaaga |
32010389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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