View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4652_high_10 (Length: 250)
Name: NF4652_high_10
Description: NF4652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4652_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 5267286 - 5267514
Alignment:
| Q |
1 |
actaatggtagttttgcaagtaacact-tagcaatgtctgcttgggggttattttcgttccatatttatgtatgatcttcttaggattgattgtgaaatt |
99 |
Q |
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| T |
5267286 |
actaatggtagttttgcaagtaacactatagcaatgtctgcttgggggttattttcgtttcatatttatgtatgatcttcttaggattgattgtgaaatt |
5267385 |
T |
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| Q |
100 |
tggtttaagcatcatgttatgcttaaaggcatgacctctttttatagttacttgttgagagatttgaagaaatggaaataaatatattttctatcatgat |
199 |
Q |
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| T |
5267386 |
tggtttaagcatcatgttatgcttaaaggcatgacctctttttatagttacttgttaagagatttgaagaaatggaaataaatatattttttatcatgat |
5267485 |
T |
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| Q |
200 |
aaaaaaggtacttggttccattaataata |
228 |
Q |
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| T |
5267486 |
aaaaaaggtacttggttccattaataata |
5267514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 34536423 - 34536502
Alignment:
| Q |
97 |
atttggtttaagcatcatgttatgcttaaaggcatgacctctttttatagttacttgttgagagatttgaagaaatggaaa |
177 |
Q |
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| T |
34536423 |
atttggttcaaacatcatgctatgcttaaca-catgacctcttttcatagtcacttgttgcgagatatggagaaatagaaa |
34536502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 55883653 - 55883578
Alignment:
| Q |
87 |
tgattgtgaaatttggtttaagcatcatgttatgcttaaaggcatgacctctttttatagttacttgttgagagatt |
163 |
Q |
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| T |
55883653 |
tgattgtcaaatttgattcaaacatcatgttatgcttaaca-catgacctcttttcgtagttacttgttgggagatt |
55883578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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