View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4652_high_3 (Length: 365)

Name: NF4652_high_3
Description: NF4652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4652_high_3
NF4652_high_3
[»] chr1 (3 HSPs)
chr1 (21-349)||(15590553-15590881)
chr1 (147-191)||(15994668-15994712)
chr1 (160-195)||(15616831-15616866)
[»] chr5 (3 HSPs)
chr5 (212-261)||(42124801-42124850)
chr5 (212-259)||(34231560-34231607)
chr5 (212-259)||(41570765-41570812)
[»] chr3 (1 HSPs)
chr3 (214-261)||(8524261-8524308)
[»] chr6 (5 HSPs)
chr6 (141-183)||(29893741-29893783)
chr6 (140-189)||(29908778-29908827)
chr6 (140-189)||(29928460-29928509)
chr6 (140-189)||(30119095-30119144)
chr6 (140-180)||(29115448-29115488)
[»] chr7 (1 HSPs)
chr7 (143-187)||(3642227-3642271)


Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 21 - 349
Target Start/End: Original strand, 15590553 - 15590881
Alignment:
Q  21 cattcaccaattcacacaattctcatattaggccattcatttctactatgaccattgtcatcaattttgcctttcctctattcttcaagatccttaagat 120  Q
    ||||| |||||||||||| |||| ||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15590553 cattctccaattcacacagttctgataataggccagtcatttctactatgaccattgtcatcagttttgcctttcctctattcttcaagatccttaagat 15590652  T
Q  121 gtggggttatcatcctcttgataccataaccttcactacacttttcaaaggtctttgtcttaacggtgatatttataaaacacttcacttaaaagtgatg 220  Q
    | ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15590653 ggggggttatcatcctcctgatgccataaccttcactacacttttcaaaggtctttgtcttaacggtgatatttataaaacacttcacttaaaagtgatg 15590752  T
Q  221 ttggcagctcaccttcaattttgttaccactcaaatctaatgtgaaatgttgtccaaccattaaatcaaagaggaagattgattggagatcaaattgatg 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15590753 ttggcagctcaccttcaattttgttaccactcaaatctaatgtgaaatgttgtccaaccattaaatcaaagaggaagattgattggagatcaaattgatg 15590852  T
Q  321 ggttttggttttattgaagacgtatttgt 349  Q
    ||||||||||||||||||||| |||||||    
T  15590853 ggttttggttttattgaagacatatttgt 15590881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 15994712 - 15994668
Alignment:
Q  147 taaccttcactacacttttcaaaggtctttgtcttaacggtgata 191  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||    
T  15994712 taaccttcaatacacttttgaaaggtctttgtcttaacggtgata 15994668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 160 - 195
Target Start/End: Original strand, 15616831 - 15616866
Alignment:
Q  160 acttttcaaaggtctttgtcttaacggtgatattta 195  Q
    ||||||| ||||||||||||||||||||||||||||    
T  15616831 acttttctaaggtctttgtcttaacggtgatattta 15616866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 42124801 - 42124850
Alignment:
Q  212 aaagtgatgttggcagctcaccttcaattttgttaccactcaaatctaat 261  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  42124801 aaagtgatgttggcagctcaccttcaattttgttacctctcaaatctaat 42124850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 259
Target Start/End: Complemental strand, 34231607 - 34231560
Alignment:
Q  212 aaagtgatgttggcagctcaccttcaattttgttaccactcaaatcta 259  Q
    ||||||||||||| || |||||| |||| |||||||||||||||||||    
T  34231607 aaagtgatgttggtagttcacctccaatcttgttaccactcaaatcta 34231560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 259
Target Start/End: Complemental strand, 41570812 - 41570765
Alignment:
Q  212 aaagtgatgttggcagctcaccttcaattttgttaccactcaaatcta 259  Q
    ||||||||||||| || |||||| ||||||||||||| ||||||||||    
T  41570812 aaagtgatgttggaagatcacctccaattttgttaccgctcaaatcta 41570765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 8524261 - 8524308
Alignment:
Q  214 agtgatgttggcagctcaccttcaattttgttaccactcaaatctaat 261  Q
    ||||||||||| |||||||||||||||||||||  ||||||| |||||    
T  8524261 agtgatgttggaagctcaccttcaattttgttattactcaaaactaat 8524308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 29893741 - 29893783
Alignment:
Q  141 ataccataaccttcactacacttttcaaaggtctttgtcttaa 183  Q
    ||||||||||||||||||||||  |||| ||||||||||||||    
T  29893741 ataccataaccttcactacactcatcaagggtctttgtcttaa 29893783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 29908778 - 29908827
Alignment:
Q  140 gataccataaccttcactacacttttcaaaggtctttgtcttaacggtga 189  Q
    |||||||||||||||||||||||  |||| ||||||||||| || |||||    
T  29908778 gataccataaccttcactacactcatcaagggtctttgtctcaaaggtga 29908827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 29928460 - 29928509
Alignment:
Q  140 gataccataaccttcactacacttttcaaaggtctttgtcttaacggtga 189  Q
    |||||||||||||||||||||||  |||| ||||||||||| || |||||    
T  29928460 gataccataaccttcactacactcatcaagggtctttgtctcaaaggtga 29928509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 30119144 - 30119095
Alignment:
Q  140 gataccataaccttcactacacttttcaaaggtctttgtcttaacggtga 189  Q
    |||||||||||||||||||||||  |||| ||||||||||| || |||||    
T  30119144 gataccataaccttcactacactcatcaagggtctttgtctcaaaggtga 30119095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 29115448 - 29115488
Alignment:
Q  140 gataccataaccttcactacacttttcaaaggtctttgtct 180  Q
    |||||||||||||||||||||||  |||| |||||||||||    
T  29115448 gataccataaccttcactacactcatcaagggtctttgtct 29115488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 3642227 - 3642271
Alignment:
Q  143 accataaccttcactacacttttcaaaggtctttgtcttaacggt 187  Q
    ||||||||||||| ||||||| |||| ||| ||||||||||||||    
T  3642227 accataaccttcaatacacttatcaatggtatttgtcttaacggt 3642271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University