View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4652_low_1 (Length: 694)
Name: NF4652_low_1
Description: NF4652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4652_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 613; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 11 - 676
Target Start/End: Complemental strand, 29787769 - 29787092
Alignment:
| Q |
11 |
ttattctacacaatctttaggacgtacaacgtgttctcccgagtcctcggtgtgcatagaggcaaagaaacgactttctgaaagatggaacgtcatggca |
110 |
Q |
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| T |
29787769 |
ttattctacacaatctttaggacgtacaacgtgttctcccgagtcctcggtgtgcatagaggcaaagaaacgactttctgaaagatggaacgtcatggca |
29787670 |
T |
|
| Q |
111 |
tctaacggaaaaggccatcaagaacaaaggcatgtgtcgagaaactctactttgggtgaaatgctttctctttcccttgtaaagaaatctgcaacatctg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29787669 |
tctaacggaaaaggccatcaagaacaaaggcatgtgtcgagaaactctactttgggtgaaatgctttctctttcccttgtaaagaaatctgcaacatctg |
29787570 |
T |
|
| Q |
211 |
tggttgagagtactaataaacaccaagaagaacaaagaaaatctgtttcttgcactgaatctttcaatgaaaaaattagcattgatgattctcctcaaaa |
310 |
Q |
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|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29787569 |
tgattgagagtactaataaacaccaagaagaagaaagaaaatctgtttcttgcactgaatctttcaatgaaaaaattagcattaatgattctcctcaaaa |
29787470 |
T |
|
| Q |
311 |
cgattgtgggttgaatcctgaccctgcatcttcagcagtctatgaacctagcctcggcattgatgccgttgacaaagaacatggctccaaggtggtggca |
410 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29787469 |
cgattgtgggttgaatcctgaccctgcatcttcaacagtctatgaacctagcctcggcattgatgccgttgacaaagaacatggctccaaggtggtggca |
29787370 |
T |
|
| Q |
411 |
aagtccaagagtaagaaatcatcatttaaagggaaagttgcaagtttcttattttcaatgagtaaaaagtcaaccaagaaaaaatctagttcatctcatt |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29787369 |
aagtccaagagtaagaaatcatcatttaaagggaaagttgcaagtttcttattttcaatgagtaaaaagtcaaccaagaaaaaatctagttcatctcatt |
29787270 |
T |
|
| Q |
511 |
cgaatgatgaat------------tcaccgaaacatcagttccatcagtaaattcatctggattcctcggagataatgtgtctcaaagcttcactgttgg |
598 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29787269 |
cgaatgatgaatctgaaactattgtcaacgaaacatcagttccatcagtaaattcatctggattcctcggagataatgtgtctcaaagcttcaatgttgg |
29787170 |
T |
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| Q |
599 |
tggatttgaagagtctcttgcagctttatgtgaatcagtctctagtgaaccacaagaagacatgattacactagaggt |
676 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29787169 |
tggatttgaagagtctcttgcagctttatgtgaatcagtctctagtgaaccacaagaagacatgattacactagaggt |
29787092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 395 - 497
Target Start/End: Original strand, 39873422 - 39873524
Alignment:
| Q |
395 |
ctccaaggtggtggcaaagtccaagagtaagaaatcatcatttaaagggaaagttgcaagtttcttattttcaatgagtaaaaagtcaaccaagaaaaaa |
494 |
Q |
| |
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|||||||| | || ||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||| |||| || ||| || |||| || | ||||| |
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| T |
39873422 |
ctccaaggagctgacaaagtcaaagagtatgaaatcatcatttaaagggaaagttgcgagtttcttattctcaaggaataagaaatcaatcagggaaaaa |
39873521 |
T |
|
| Q |
495 |
tct |
497 |
Q |
| |
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||| |
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| T |
39873522 |
tct |
39873524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 184
Target Start/End: Original strand, 39873063 - 39873202
Alignment:
| Q |
42 |
tgttctcccgagtcctcggtgtgcatagaggcaaagaaacgactttctgaaagatggaacgtcatggcatctaacggaaaaggccatcaagaacaaaggc |
141 |
Q |
| |
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|||||||| ||||| || || |||| |||||| |||||||||||||||||||||||| | | ||||||||||| || || |||||||||||| | |
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| T |
39873063 |
tgttctcctgagtcgtcagtatgcagagaggccaagaaacgactttctgaaagatgggccatgatggcatctaa---gaagggttttcaagaacaaagac |
39873159 |
T |
|
| Q |
142 |
atgtgtcgagaaactctactttgggtgaaatgctttctctttc |
184 |
Q |
| |
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|| || ||||| |||||||||||| || |||||| ||||||| |
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| T |
39873160 |
atatgcggagaagctctactttgggcgagatgcttgctctttc |
39873202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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