View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4652_low_10 (Length: 280)
Name: NF4652_low_10
Description: NF4652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4652_low_10 |
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| [»] chr3 (7 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 53 - 280
Target Start/End: Complemental strand, 23196381 - 23196154
Alignment:
| Q |
53 |
gaattatcatgaatatcggcgtaggataagatcaagtggcgcgtggttgataagcgaaggtgtttcttagcgaactttggatcagaaataagggttttca |
152 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
23196381 |
gaatgatcatgaatatcggcgtaggataagatcaagtggcgcgtggttgataagcgaaggtgtttcttagcgaactttggatcagaaataagggtattga |
23196282 |
T |
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| Q |
153 |
aggacttactgaggcatcgtagttgtaggaggaacctgacggggagcctgcatagaatctctgccactagttcgaatgggagttcgggcaacattggtgg |
252 |
Q |
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| T |
23196281 |
agaacttactgaggcatcgtagttgtaggaggaacatgacagggagcctgcatagaatctctgccactagttcgaacgggagttcagacaacaacggtgg |
23196182 |
T |
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| Q |
253 |
gtcggaagagatgaaaagtgaacataag |
280 |
Q |
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| T |
23196181 |
gtcggaagacatgaaaagtgaacataag |
23196154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 95 - 280
Target Start/End: Original strand, 23235596 - 23235781
Alignment:
| Q |
95 |
gtggttgataagcgaaggtgtttcttagcgaactttggatcagaaataagggttttcaaggacttactgaggcatcgtagttgtaggaggaacctgacgg |
194 |
Q |
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|||||||||||||||||||||||||||||||| || ||||||||||| ||| | || ||||||||||| |||||||| ||||||||||||| | |||| | |
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| T |
23235596 |
gtggttgataagcgaaggtgtttcttagcgaaattgggatcagaaatcaggttattgaaggacttactaaggcatcgaagttgtaggaggagcttgacag |
23235695 |
T |
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| Q |
195 |
ggagcctgcatagaatctctgccactagttcgaatgggagttcgggcaacattggtgggtcggaagagatgaaaagtgaacataag |
280 |
Q |
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| T |
23235696 |
gaagtctgcatagaatctctgccaccaattcgagcgggagatccggcagccgcgatgggtcagaagagttgaagagtgaacgtaag |
23235781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 90 - 219
Target Start/End: Original strand, 23231699 - 23231828
Alignment:
| Q |
90 |
ggcgcgtggttgataagcgaaggtgtttcttagcgaactttggatcagaaataagggttttcaaggacttactgaggcatcgtagttgtaggaggaacct |
189 |
Q |
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|||| ||| |||||||||||||||||||||| ||||| || |||||||| || ||||| || |||||||||||||| ||||| ||||||||||||| | | |
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| T |
23231699 |
ggcgggtgattgataagcgaaggtgtttctttgcgaaattgggatcagagattagggtattgaaggacttactgagacatcgaagttgtaggaggagctt |
23231798 |
T |
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| Q |
190 |
gacggggagcctgcatagaatctctgccac |
219 |
Q |
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| T |
23231799 |
gacaggaagtctgcatagaatctctgccac |
23231828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 131 - 280
Target Start/End: Original strand, 23226409 - 23226558
Alignment:
| Q |
131 |
ggatcagaaataagggttttcaaggacttactgaggcatcgtagttgtaggaggaacctgacggggagcctgcatagaatctctgccactagttcgaatg |
230 |
Q |
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||||||||||| ||| | |||||||||| |||||| ||||| ||||||| ||||| | ||||||||||||| ||||||||||||| | | ||||| || |
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| T |
23226409 |
ggatcagaaattaggatattcaaggactaactgagacatcgaagttgtaagaggatcttgacggggagcctacatagaatctctgagatcaattcgagtg |
23226508 |
T |
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| Q |
231 |
ggagttcgggcaacattggtgggtcggaagagatgaaaagtgaacataag |
280 |
Q |
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|||| ||||||| | ||| ||||||||||||||||| |||||||||||| |
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| T |
23226509 |
ggagatcgggcagcggtggcgggtcggaagagatgaagagtgaacataag |
23226558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 23240193 - 23240269
Alignment:
| Q |
95 |
gtggttgataagcgaaggtgtttcttagcgaactttggatcagaaataagggttttcaaggacttactgaggcatcg |
171 |
Q |
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| T |
23240193 |
gtggttgataagcgaaggtgtttcttaacgaaataaggatcagaaattagggtattgaaggacttactgaggcatcg |
23240269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 216
Target Start/End: Original strand, 37754050 - 37754158
Alignment:
| Q |
108 |
gaaggtgtttcttagcgaactttggatcagaaataagggttttcaaggacttactgaggcatcgtagttgtaggaggaacctgacggggagcctgcatag |
207 |
Q |
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||||||| ||||| ||||| |||||||| || ||||| | || |||||||||| |||||| || ||||||| ||| ||| |||| ||||| |||||||| |
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| T |
37754050 |
gaaggtgcttctttgcgaattttggatcggagataagagagttgaaggacttacagaggcaccggagttgtaagagtaacttgacagggagtctgcatag |
37754149 |
T |
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| Q |
208 |
aatctctgc |
216 |
Q |
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| T |
37754150 |
aatttctgc |
37754158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 37758476 - 37758546
Alignment:
| Q |
149 |
ttcaaggacttactgaggcatcgtagttgtaggaggaacctgacggggagcctgcatagaatctctgccac |
219 |
Q |
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| T |
37758476 |
ttcaaggacttgcagaggcatcggagttgtaagagtaacttgacaggaagcctacatagaatttctgccac |
37758546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 98 - 280
Target Start/End: Complemental strand, 19118380 - 19118198
Alignment:
| Q |
98 |
gttgataagcgaaggtgtttcttagcgaactttggatcagaaataagggttttcaaggacttactgaggcatcgtagttgtaggaggaacctgacgggga |
197 |
Q |
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||||||| ||||||||||||||| ||||| || ||||| ||||| ||||| || | ||||||||| | ||||| ||||||| ||||| | | ||||| | |
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| T |
19118380 |
gttgataggcgaaggtgtttctttgcgaatttgggatcggaaattagggtattgagggacttactttgacatcgaagttgtatgaggagcttcacgggaa |
19118281 |
T |
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| Q |
198 |
gcctgcatagaatctctgccactagttcgaatgggagttcgggcaacattggtgggtcggaagagatgaaaagtgaacataag |
280 |
Q |
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| T |
19118280 |
gcctgcacagaatctctgccaccagttcgaacgggagatcgggcagcggcggtggggagaagcagatgaaaagtgaacataag |
19118198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 242
Target Start/End: Complemental strand, 19125689 - 19125545
Alignment:
| Q |
98 |
gttgataagcgaaggtgtttcttagcgaactttggatcagaaataagggttttcaaggacttactgaggcatcgtagttgtaggaggaacctgacgggga |
197 |
Q |
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||||||| ||||||||||||||| |||| | ||||||||||| ||||| || | ||||||||| | ||||| ||||||| ||||| | | ||||| | |
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| T |
19125689 |
gttgataggcgaaggtgtttcttcacgaagatgggatcagaaattagggtattgagggacttactctgacatcgaagttgtacgaggagcttcacgggaa |
19125590 |
T |
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| Q |
198 |
gcctgcatagaatctctgccactagttcgaatgggagttcgggca |
242 |
Q |
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| T |
19125589 |
gcctgcacagaatctctgcgaccagttcgaatgggagatcgggca |
19125545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 7169399 - 7169472
Alignment:
| Q |
88 |
gtggcgcgtggttgataagcgaaggtgtttcttagcgaactttggatcagaaataagggttttcaaggacttac |
161 |
Q |
| |
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|||| |||||||||| ||||||||||| ||||||||||| |||| ||| || ||||| | |||| ||||||||| |
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| T |
7169399 |
gtggagcgtggttgacaagcgaaggtgattcttagcgaattttgaatcggagataagagatttccaggacttac |
7169472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 33037523 - 33037470
Alignment:
| Q |
88 |
gtggcgcgtggttgataagcgaaggtgtttcttagcgaactttggatcagaaat |
141 |
Q |
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|||||||||| |||| | |||||| |||||||||||||| || ||||||||||| |
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| T |
33037523 |
gtggcgcgtgtttgacatgcgaagatgtttcttagcgaatttaggatcagaaat |
33037470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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