View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4652_low_16 (Length: 242)
Name: NF4652_low_16
Description: NF4652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4652_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 48138454 - 48138679
Alignment:
| Q |
1 |
attgaagaataagctttgttcagtactcattcactcactctagttagaaattggttatttgcatcttgttttaccagtagcatggcttgttggaggcgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48138454 |
attgaagaataagctttgttcagtactcattcactcactctagttagaaattggttatttgcatcttgttttaccagtagcatggcttgttggaggcgat |
48138553 |
T |
|
| Q |
101 |
tcataacgcacctccgttattcaacccatcaatctccatggcaggttagttattattattactcatttcctttattcaattttcacttacactttgtttc |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
48138554 |
tcataacgcacctccgttattcaacccatcaatctccatggcaggttagttattattattactcatttcctttatacaattttcacttacacattgtttc |
48138653 |
T |
|
| Q |
201 |
atcatcacattcacttgcgtcatttt |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
48138654 |
atcatcacattcacttgcgtcatttt |
48138679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 81 - 186
Target Start/End: Complemental strand, 48126369 - 48126262
Alignment:
| Q |
81 |
catggcttgttggaggcgattcataacgcacctccgttattcaacccatcaatctccatggcaggttagt---tattattattactcatttcctttattc |
177 |
Q |
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|
||||||||||||||| || |||||||| | ||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||| ||||||||| | |
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| T |
48126369 |
catggcttgttggagacgtttcataacaaaactccgttattcaacccatcaacctccaaggcaggttagttactattattattattca-ttcctttatac |
48126271 |
T |
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| Q |
178 |
aattttcac |
186 |
Q |
| |
|
||||||||| |
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|
| T |
48126270 |
aattttcac |
48126262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 25251129 - 25251354
Alignment:
| Q |
1 |
attgaagaataagctttgttcagtactcattcactcactctagttagaaattggttatttgcatcttgttttaccagtagcatggcttgttggaggcgat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25251129 |
attgaagaataagctttgttcagtactcactcactcactctagttagaaattggttatttgcatcttgttttaccagtagcatggcttgttggaggcgat |
25251228 |
T |
|
| Q |
101 |
tcataacgcacctccgttattcaacccatcaatctccatggcaggttagttattattattactcatttcctttattcaattttcacttacactttgtttc |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
25251229 |
tcataatgcacctccgttattcaacccatcaatctccatggcaggttagttattattattactcatttcctttatacaattttcacttacacattgtttc |
25251328 |
T |
|
| Q |
201 |
atcatcacattcacttgcgtcatttt |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
25251329 |
atcatcacattcacttgcgtcatttt |
25251354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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