View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4652_low_18 (Length: 237)
Name: NF4652_low_18
Description: NF4652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4652_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 46789875 - 46790099
Alignment:
| Q |
1 |
tttgtctcttggaaaacaagttccactgttgagccatattttagtactttcactttagttcctctttttggtgtattcaaggtcaaagggaaactatctg |
100 |
Q |
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| T |
46789875 |
tttgtcccctggaaaacaagttccactgttgagccatattttagtactttcactttagttcctctttttggtgtattcaaggtcaaagggaaactatctg |
46789974 |
T |
|
| Q |
101 |
cagtgaagttaaatattaaaggtggaaaacttggaaatccctttctgaataccccgttgatatgatagtaataagcttctaatatgtcaaatttattagg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
46789975 |
cagtgaagttaaatattaaaggtggaaaacttggaaatcccttgctgaataccccgttgatatgatagtaataggcttctaatatgtcaaatttattagg |
46790074 |
T |
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| Q |
201 |
ggtttgaaaacttatgttgttcatg |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
46790075 |
ggtttgaaaacttatgttgttcatg |
46790099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 46782436 - 46782660
Alignment:
| Q |
1 |
tttgtctcttggaaaacaagttccactgttgagccatattttagtactttcactttagttcctctttttggtgtattcaaggtcaaagggaaactatctg |
100 |
Q |
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|||||| |||||||||||| ||||||| ||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| ||| ||| || | |
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| T |
46782436 |
tttgtcccttggaaaacaacctccactgctgagccatattttagaactttaactttagttcctctccttggtgtattcaaggtcataggcaaagaatttc |
46782535 |
T |
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| Q |
101 |
cagtgaagttaaatattaaaggtggaaaacttggaaatccctttctgaataccccgttgatatgatagtaataagcttctaatatgtcaaatttattagg |
200 |
Q |
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|| ||||||||||||| || |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
46782536 |
cattgaagttaaatataaatggtggaaacctgggaaatccctttctgaataccccattgatatgatagtaataagcttctagtatgtcaaatttattagg |
46782635 |
T |
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| Q |
201 |
ggtttgaaaacttatgttgttcatg |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
46782636 |
ggtttgaaaacttatgttgttcatg |
46782660 |
T |
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