View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4652_low_19 (Length: 236)
Name: NF4652_low_19
Description: NF4652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4652_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 5267191 - 5266975
Alignment:
| Q |
6 |
gtcaaagctttgaagttgtcttgtgatatcttaataaattgggcaagagtttcttcaaggctctacttcgtaagctgcatctgaggagtactctacgaag |
105 |
Q |
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| T |
5267191 |
gtcaaagctttgaagttgtcttgtgatatcttaataaactgggcaagagtttcttcaaggctctacttcgtaagctgcatctgaggagtactctacgaag |
5267092 |
T |
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| Q |
106 |
gcttaaaaccttgatttctcttccaaaaagagttgggatgatcctgcacaga--atgtgtgtcgaagtcctttgccattttcacctcttagttgagaaat |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5267091 |
gcttaaaaccttgatttctcttccaaaaagagttgggatgatcctgcacagagtgtgtgtgtcgaagtcctttgccattttcacctcttaattgagaaat |
5266992 |
T |
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| Q |
204 |
aacctcttagttgtatg |
220 |
Q |
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| T |
5266991 |
aacctcttagttgtatg |
5266975 |
T |
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