View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4652_low_2 (Length: 433)
Name: NF4652_low_2
Description: NF4652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4652_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 196 - 392
Target Start/End: Complemental strand, 28402531 - 28402334
Alignment:
| Q |
196 |
acttcgtgaaatgctcgggatgatttgcttcgtgtgaaatagcactgccctataataaaaacataaaa-tgttgaatgaatgtttgaaaataaagtactt |
294 |
Q |
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| T |
28402531 |
acttcgtgaaatgctcgggatgatttgcttcgtgtgaaatagcactgccctataataaaaacataaaagtgttgaatgaatgtttgaaaataaagtgctt |
28402432 |
T |
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| Q |
295 |
atgaatgcatcaaggtgacttctcttggatgcttaaatggtctgaagacaacatcacacgnnnnnnnaatgctcttatttctcaaagattcagtcact |
392 |
Q |
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| T |
28402431 |
atgaatgcatcaaggtgacttctcttggctgcttaaatggtctgaaaacaacatcacacgttttcttaatgctcttatttctcaaagattcagtcact |
28402334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 28402753 - 28402559
Alignment:
| Q |
1 |
atataatagatgtgttaaattggtgatgtgatacgaagaaagatagataaaaaatacttgttgaatgcattatnnnnnnngggtaatgtttcttatcgca |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28402753 |
atatgatagatgtgttaaattggtgatgtgatacgaagaaagatagagaaaaaatacttgttgaatgcattataaaaaa-gggtaatgtttcttatcgca |
28402655 |
T |
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| Q |
101 |
agaggtgatataacgaaaatatcgcgaccctgtatttgtataaagcgtgaatgtggaggactattttgtttttcaatccaactgcccatggtctta |
196 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28402654 |
agaggtgatatagcaaaaatatcgcgaccctgtatttgtataaagcgtgaatgtggaggattattttgtttttcaatccaactgcccatggtctta |
28402559 |
T |
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