View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4652_low_3 (Length: 381)
Name: NF4652_low_3
Description: NF4652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4652_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 42538087 - 42538451
Alignment:
| Q |
1 |
gttgtggaaaattgagggaatgatttgatgaagttatcatatgagtcttgtaaaagtgggagacattcatggtttgtgaaatgtgtgttggggtaaagac |
100 |
Q |
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| T |
42538087 |
gttgtggaaaattgagggaatgatttgatgaagttattatatgagtcttgtaaaagtgggagagattcatggtttgtgaaatgtgtgttggggtaaagac |
42538186 |
T |
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| Q |
101 |
ttgaggatgtggctgaggctaagtcatcatttttactgacactatttgaattggaagtgttatcatgggaattctcagaggcaagaaatggagatggaaa |
200 |
Q |
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| T |
42538187 |
ttgaagatgtggctgaggataagtcatcaattctactgacactatttgaattggaagtgttatcatgggaattctcagaggcaagaaatggagatggaaa |
42538286 |
T |
|
| Q |
201 |
acaaccattgaagcagggttgtgatgatgttcctccagaacatggtggttgcattttagctagagagttcaaaacattgacttcaaattttattgtaaac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
42538287 |
acaaccattgaagcagggttgtgatgatgttcctccagaacatggtggttgcattttagctagagagttcaaaacattgacttcaaattttattgtatac |
42538386 |
T |
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| Q |
301 |
gcctaactcaatatatgtaatacatacatatatatggtcaagagttacaagtccaatgataaatg |
365 |
Q |
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|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42538387 |
gcctaactcaatgtatgtcatacatacatatatatggtcaagagttacaagtccaatgataaatg |
42538451 |
T |
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