View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4652_low_6 (Length: 294)
Name: NF4652_low_6
Description: NF4652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4652_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 4236670 - 4236387
Alignment:
| Q |
1 |
agatggtggtaaaagacaatggtttaacattgttaggacttgtaggcattaaggatccatgtcgcccgggggtgaagacggcagtggaagcttgccaaca |
100 |
Q |
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| T |
4236670 |
agatggtggtaaaagacaatggtttaacattgttaggacttgtaggcattaaggatccatgtcgcccgggggtgaagacgacagtggaagcttgccaaca |
4236571 |
T |
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| Q |
101 |
tgctggtgtgaatgtcaaaatgattacaggtattactaaaatatcttatttatcgataacttgataatataaaattctctatttatacatacgagtctat |
200 |
Q |
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| T |
4236570 |
tgctggtgtgaatgtcaaaatgattacaggtattactaaaatatcttatttatcgataacttgataatataaaattctctatttatacatacgagcctat |
4236471 |
T |
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| Q |
201 |
atgaatacgaagaagataataagaa---------taactaattcttaattgactattaactaactttatctctgatgacaggtg |
275 |
Q |
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| T |
4236470 |
atggaaatgatgaatataataagaatagttaacctaactagttgttaattaaccattaacatactttatctctgatgacaggtg |
4236387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 165
Target Start/End: Original strand, 37067887 - 37067926
Alignment:
| Q |
126 |
acaggtattactaaaatatcttatttatcgataacttgat |
165 |
Q |
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| T |
37067887 |
acaggtattactaaaatatctcatttattgataacttgat |
37067926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 37060411 - 37060449
Alignment:
| Q |
126 |
acaggtattactaaaatatcttatttatcgataacttga |
164 |
Q |
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| T |
37060411 |
acaggtattactaaaatatctcatttattgataacttga |
37060449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 6185763 - 6185611
Alignment:
| Q |
1 |
agatggtggtaaaagacaatggtttaacattgttaggacttgtaggcattaaggatccatgtcgcccgggggtgaagacggcagtggaagcttgccaaca |
100 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| |
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| T |
6185763 |
agatggtggtaaaagagaatgatttaacattgttaggacttgtcggcattaaggatccatgtcgcccaggggtgaagacagcggtggaagcttgccaaca |
6185664 |
T |
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| Q |
101 |
tgctggtgtgaatgtcaaaatgattacaggtattactaaaatatcttatttat |
153 |
Q |
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| T |
6185663 |
tgccggtgtgaatgtcaaaatgattacaggtattactataatatctcatttat |
6185611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 165
Target Start/End: Complemental strand, 402337 - 402298
Alignment:
| Q |
126 |
acaggtattactaaaatatcttatttatcgataacttgat |
165 |
Q |
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| T |
402337 |
acaggtattactaaaatatctcatttatcgataacttgat |
402298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 45369930 - 45369992
Alignment:
| Q |
177 |
ctctatttatacatacgagtctatatgaatacgaagaagataataagaataactaattcttaa |
239 |
Q |
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| T |
45369930 |
ctctatttatacatatgagtccatatgaaaatgaaaaggataacaaggataactaattcttaa |
45369992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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