View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4652_low_9 (Length: 281)

Name: NF4652_low_9
Description: NF4652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4652_low_9
NF4652_low_9
[»] chr7 (2 HSPs)
chr7 (18-230)||(28490849-28491073)
chr7 (28-61)||(30089001-30089034)
[»] chr4 (2 HSPs)
chr4 (20-136)||(31390207-31390324)
chr4 (19-83)||(10076903-10076967)
[»] chr5 (3 HSPs)
chr5 (35-136)||(39665823-39665924)
chr5 (23-68)||(35736058-35736103)
chr5 (20-62)||(2541876-2541918)
[»] chr3 (3 HSPs)
chr3 (20-87)||(46097431-46097499)
chr3 (19-72)||(28480045-28480098)
chr3 (19-72)||(28509228-28509281)
[»] chr8 (1 HSPs)
chr8 (21-53)||(40294248-40294280)
[»] chr1 (1 HSPs)
chr1 (25-61)||(37040630-37040666)


Alignment Details
Target: chr7 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 28490849 - 28491073
Alignment:
Q  18 aattttacccttaattcatttagtaaaagtaaaattcatttaatgaatgcttttgattattgtaagggtaaaaaggaaaaatattattaattgtatttta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28490849 aattttacccttaattcatttagtaaaagtaaaattcatttaatgaatgcttttgattattgtaagggtaaaaaggaaaaatattattaattgtatttta 28490948  T
Q  118 atttcttaaaagaaccaaaagtttgg------------aaaattaaaaagaccaaaattggtgacggaggaagtacttatttagttctacacctcactaa 205  Q
    ||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  28490949 atttcttaaaagaaccaaaagtttggaaaattaaaataaaaattaaaaagaccaaaattggtgacggagggaatacttatttagttctacacctcactaa 28491048  T
Q  206 aatatttactaattgagcctagcac 230  Q
    |||||||||||||||||||||||||    
T  28491049 aatatttactaattgagcctagcac 28491073  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 30089034 - 30089001
Alignment:
Q  28 ttaattcatttagtaaaagtaaaattcatttaat 61  Q
    |||||||||||||||||||| |||||||||||||    
T  30089034 ttaattcatttagtaaaagtcaaattcatttaat 30089001  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 31390207 - 31390324
Alignment:
Q  20 ttttacccttaattcatttagtaaaagtaaaattcatttaatgaatgcttttgattattgtaagggta-aaaaggaaaaatattattaattgtattttaa 118  Q
    |||||||||||||||||||| | ||||||||||| |||||||| ||||||||| || |||||||||||  |||||||||| || ||||||| ||| ||      
T  31390207 ttttacccttaattcatttaatgaaagtaaaatttatttaatgcatgcttttggtttttgtaagggtactaaaggaaaaacatcattaattatatattgg 31390306  T
Q  119 tttcttaaaagaaccaaa 136  Q
    |||  |||||||||||||    
T  31390307 ttttctaaaagaaccaaa 31390324  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 10076967 - 10076903
Alignment:
Q  19 attttacccttaattcatttagtaaaagtaaaattcatttaatgaatgcttttgattattgtaag 83  Q
    ||||||||||||||||||||| ||||| || |||  |||||||| ||| ||||| || |||||||    
T  10076967 attttacccttaattcatttaataaaaatataatcgatttaatgtatgtttttggttgttgtaag 10076903  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 136
Target Start/End: Original strand, 39665823 - 39665924
Alignment:
Q  35 atttagtaaaagtaaaattcatttaatgaatgcttttgattattgtaagggta-aaaaggaaaaatattattaattgtattttaatttcttaaaagaacc 133  Q
    |||||||||||  ||||||||||||||  |||||||| ||| || |||||||| ||||||||||| || ||||||||||| ||  |||| ||||||||||    
T  39665823 atttagtaaaaa-aaaattcatttaattcatgctttttatttttctaagggtataaaaggaaaaagatcattaattgtatcttggtttcctaaaagaacc 39665921  T
Q  134 aaa 136  Q
    |||    
T  39665922 aaa 39665924  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 35736103 - 35736058
Alignment:
Q  23 tacccttaattcatttagtaaaagtaaaattcatttaatgaatgct 68  Q
    |||| ||||||||||||||||||||||||| ||||||||| |||||    
T  35736103 tacctttaattcatttagtaaaagtaaaatgcatttaatgcatgct 35736058  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 2541876 - 2541918
Alignment:
Q  20 ttttacccttaattcatttagtaaaagtaaaattcatttaatg 62  Q
    |||||||||| | |||||| |||||||||||||||||||||||    
T  2541876 ttttacccttgactcattttgtaaaagtaaaattcatttaatg 2541918  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 46097431 - 46097499
Alignment:
Q  20 ttttacccttaattcatttagtaaaagtaa-aattcatttaatgaatgcttttgattattgtaagggta 87  Q
    |||||||||||||| ||||||||||||||| | |||||||||||  |||||||| || ||| |||||||    
T  46097431 ttttacccttaatttatttagtaaaagtaagacttcatttaatgcttgcttttggtttttgaaagggta 46097499  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 28480098 - 28480045
Alignment:
Q  19 attttacccttaattcatttagtaaaagtaaaattcatttaatgaatgcttttg 72  Q
    |||||| ||||||||||||||  |||| | |||||||||||||| |||||||||    
T  28480098 attttatccttaattcatttacgaaaaattaaattcatttaatgcatgcttttg 28480045  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 28509281 - 28509228
Alignment:
Q  19 attttacccttaattcatttagtaaaagtaaaattcatttaatgaatgcttttg 72  Q
    |||||| ||||||||||||||  |||| | |||||||||||||| |||||||||    
T  28509281 attttatccttaattcatttacgaaaaattaaattcatttaatgcatgcttttg 28509228  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 40294280 - 40294248
Alignment:
Q  21 tttacccttaattcatttagtaaaagtaaaatt 53  Q
    ||||||||||||||||||||||||| |||||||    
T  40294280 tttacccttaattcatttagtaaaaataaaatt 40294248  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 37040630 - 37040666
Alignment:
Q  25 cccttaattcatttagtaaaagtaaaattcatttaat 61  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  37040630 cccttaattcatttaataaaaataaaattcatttaat 37040666  T

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