View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4653-Insertion-1 (Length: 1078)

Name: NF4653-Insertion-1
Description: NF4653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4653-Insertion-1
NF4653-Insertion-1
[»] chr4 (20 HSPs)
chr4 (637-1056)||(3671048-3671470)
chr4 (127-590)||(3670517-3670982)
chr4 (670-937)||(54860810-54861077)
chr4 (655-938)||(55657369-55657652)
chr4 (644-929)||(52982885-52983170)
chr4 (644-938)||(55619009-55619302)
chr4 (644-938)||(55626313-55626606)
chr4 (676-935)||(55663621-55663880)
chr4 (653-938)||(55637136-55637421)
chr4 (8-123)||(3670363-3670481)
chr4 (756-938)||(54630132-54630314)
chr4 (663-856)||(54630322-54630515)
chr4 (943-1056)||(55636917-55637032)
chr4 (944-1036)||(54861185-54861278)
chr4 (656-767)||(50189997-50190108)
chr4 (943-1002)||(55663993-55664052)
chr4 (943-1036)||(52983286-52983380)
chr4 (365-396)||(49211849-49211880)
chr4 (368-402)||(55157627-55157661)
chr4 (368-397)||(3673427-3673456)
[»] chr8 (5 HSPs)
chr8 (615-940)||(9891432-9891757)
chr8 (944-1056)||(9891204-9891318)
chr8 (480-619)||(9891792-9891921)
chr8 (727-849)||(17220158-17220280)
chr8 (395-453)||(9891982-9892040)
[»] chr2 (2 HSPs)
chr2 (627-938)||(13403543-13403854)
chr2 (943-1054)||(13403326-13403439)
[»] chr1 (1 HSPs)
chr1 (638-763)||(37308569-37308694)
[»] chr7 (3 HSPs)
chr7 (365-396)||(4125478-4125509)
chr7 (365-396)||(24507866-24507897)
chr7 (678-763)||(46153223-46153308)
[»] chr5 (1 HSPs)
chr5 (365-396)||(7725536-7725567)
[»] scaffold0276 (1 HSPs)
scaffold0276 (366-396)||(2109-2139)


Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 637 - 1056
Target Start/End: Original strand, 3671048 - 3671470
Alignment:
Q  637 gttgagaaccattgcctggaggtagcgtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttctcacaaatttcacagttgtcatg 736  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  3671048 gttgagaaccattgcctggaggtagcgtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttctcataaatttcatagttgtcatg 3671147  T
Q  737 actctgcaagttttcaatcttttccaatccccccgcgtcctctatcatcagagcataccagttgacatctcccatgtaaccggggtttttctctgcttct 836  Q
    ||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||    
T  3671148 actctgcaagtttccaatcttttccaatccctccgcgtcccctatcatcagagcatacaagttgacatctcccgtgtaaccggggtttttctccgcttct 3671247  T
Q  837 ccaaccttcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggc 936  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3671248 ccaaccttcagaaaattctcaagacattgcaaacagacagtaacaatttttggatcagagcaaacgagcaaatcacacagaggcttaatgcaaccctggc 3671347  T
Q  937 tcg-caaatactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaact-cgcattttgaagaag 1034  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3671348 tcgccaaatactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaag 3671447  T
Q  1035 a-tgaccagaagggcaatcagac 1056  Q
    | |||||||| ||||||||||||    
T  3671448 attgaccagaggggcaatcagac 3671470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 127 - 590
Target Start/End: Original strand, 3670517 - 3670982
Alignment:
Q  127 tgaagaacatttaatttggaattagaacgttactcgttagcttggatcctttgtagtcctccggtcggtgcataaaattttgaaccattggatttgaggt 226  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| || |||||||||||||| |||||||||||||||||||    
T  3670517 tgaagaacatttaatttggaattagaacgttactcgtcagcttggatcctctgtagtcctccagttggtgcataaaatttcgaaccattggatttgaggt 3670616  T
Q  227 gcaactcaatccaacggtcgagatcttgttacaccgatttgatgactctagaggatctattttccacttatcatgcatgcttttgtgtatattataggaa 326  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3670617 gcaactcaatccaacggtcgagatcttgctacaccgatttgatgactctagaggatctattttccacttatcatgcatgcttttgtgtatattataggaa 3670716  T
Q  327 ttctagtctaagaaattgttatagacatctactaatttaactattagaatataaaatattcattgtataatttgtttattttctaattaactttcgtgta 426  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||| |||||||||||| |||||    
T  3670717 ttctagtctaagaagttgttatagacatctactaatttaactattagaatataaaatatccattgcataatttatttatttcctaattaacttttgtgta 3670816  T
Q  427 ataatagttttcatttaaataacaaaatgtattttatt--nnnnnnngaaaacaaagacaggcacgagaatgcccatcttacacactagttaccaataaa 524  Q
    ||| ||||||||||||||||||||||||||||||||||          |||| ||| ||||||||||||||||||||||||||||||||||  |||||||    
T  3670817 atattagttttcatttaaataacaaaatgtattttattaaaaaaaaaaaaaaaaaaaacaggcacgagaatgcccatcttacacactagttgtcaataaa 3670916  T
Q  525 aactacgactcaataaaggatagaatccaagctggcatcaaagaaaccactcgtcatggttccttg 590  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  3670917 aactacgactcaataaaggatagaatccaagctggcatcaaagaaaccactcgtcacagttccttg 3670982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 160; E-Value: 1e-84
Query Start/End: Original strand, 670 - 937
Target Start/End: Original strand, 54860810 - 54861077
Alignment:
Q  670 cttcatcttccaaccaatatgtctcaagaattttgacagccttctcacaaatttcacagttgtcatgactctgcaagttttcaatcttttccaatccccc 769  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||| |||||| ||| |||||||||||||||||| |    
T  54860810 cttcatcttccaaccaatatgtctcaagaattttaacagccttctcataaatttcatagttgtcatgattctgcatgttatcaatcttttccaatccctc 54860909  T
Q  770 cgcgtcctctatcatcagagcataccagttgacatctcccatgtaaccggggtttttctctgcttctccaaccttcagaaaattctcaagacattgtaaa 869  Q
     || |||||||||||| |||||||| |||||||||||||| ||| |||   | |||||||  |||||||||||||||||| ||||||||||| || || |    
T  54860910 agcatcctctatcatctgagcatacaagttgacatctcccgtgttaccaaagcttttctccacttctccaaccttcagaatattctcaagaccttctaga 54861009  T
Q  870 cagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggct 937  Q
    ||||||||||||||| ||||||||| |||||| | |||||||||||||||||||||||||||||||||    
T  54861010 cagacagtaacaattcttggatcagggcaaaccatcaaatcacacagaggcttaatgcaaccctggct 54861077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 160; E-Value: 1e-84
Query Start/End: Original strand, 655 - 938
Target Start/End: Original strand, 55657369 - 55657652
Alignment:
Q  655 gaggtagcgtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttctcacaaatttcacagttgtcatgactctgcaagttttcaat 754  Q
    ||||||| |||||| |  ||||||||||||||||||||||||||||||| |||||||||||| ||||||||  |||||||||||||||||||||||| ||    
T  55657369 gaggtagtgtctcatcaacatcttccaaccaatatgtctcaagaattttaacagccttctcataaatttcattgttgtcatgactctgcaagttttcgat 55657468  T
Q  755 cttttccaatccccccgcgtcctctatcatcagagcataccagttgacatctcccatgtaaccggggtttttctctgcttctccaaccttcagaaaattc 854  Q
    ||||||||||||| |  | || ||||||||| |||||||| |||||||||||||| ||| ||    | ||||||| |||||||||||||| |||||||||    
T  55657469 cttttccaatccctcaacatcatctatcatctgagcatacaagttgacatctcccgtgttacaaaagcttttctccgcttctccaacctttagaaaattc 55657568  T
Q  855 tcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggctc 938  Q
    |||||||  | ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  55657569 tcaagaccatctaaacagacagaaacaatttttggatcagggcaaacaagcaaatcacacagaggcttaatgcaaccatggctc 55657652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 158; E-Value: 2e-83
Query Start/End: Original strand, 644 - 929
Target Start/End: Original strand, 52982885 - 52983170
Alignment:
Q  644 accattgcctggaggtagcgtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttctcacaaatttcacagttgtcatgactctgc 743  Q
    ||||| || ||||||||| |||||| ||||||||||||||||||||||||| |||||| | ||||| |||||| ||||||||  ||||||||||||||||    
T  52982885 accatggcttggaggtagtgtctcatcttcatcttccaaccaatatgtctcgagaattctaacagcattctcataaatttcattgttgtcatgactctgc 52982984  T
Q  744 aagttttcaatcttttccaatccccccgcgtcctctatcatcagagcataccagttgacatctcccatgtaaccggggtttttctctgcttctccaacct 843  Q
    |||||||||||||||||||||||| | || |||||||||||| |||||||| | |||||||||| | ||| ||      ||||||| |||||||||||||    
T  52982985 aagttttcaatcttttccaatccctcagcatcctctatcatctgagcatacaaattgacatctctcgtgttacaaaaccttttctccgcttctccaacct 52983084  T
Q  844 tcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaa 929  Q
    |||||| |||||||||||||| |||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  52983085 tcagaatattctcaagacattctaaacagacaataataatttttggatcagggcaaacaagcaaatcacacagaggcttaatgcaa 52983170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 155; E-Value: 1e-81
Query Start/End: Original strand, 644 - 938
Target Start/End: Original strand, 55619009 - 55619302
Alignment:
Q  644 accattgcctggaggtagcgtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttctcacaaatttcacagttgtcatgactctgc 743  Q
    ||||| |||| ||||||| |||||| || |||||||||||||||||||||| |||||||| |||||||||||| |||||||   ||||||||||||||||    
T  55619009 accatggcctagaggtagtgtctcatctacatcttccaaccaatatgtctcgagaattttaacagccttctcataaatttctttgttgtcatgactctgc 55619108  T
Q  744 aagttttcaatcttttccaatccccccgcgtcctctatcatcagagcataccagttgacatctcccatgtaaccggggtttttctctgcttctccaacct 843  Q
    |||||||| || |||||||||||| | || || ||||||||| |||||||| |||||||||||||| ||| ||    | ||||||| |||||||||||||    
T  55619109 aagttttcgat-ttttccaatccctcagcatcatctatcatctgagcatacaagttgacatctcccgtgttacaaaagcttttctccgcttctccaacct 55619207  T
Q  844 tcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggctc 938  Q
    | ||||||||||||||||  | ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  55619208 ttagaaaattctcaagaccatctaaacagacagaaacaatttttggatcagggcaaacaagcaaatcacacagaggcttaatgcaaccatggctc 55619302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 155; E-Value: 1e-81
Query Start/End: Original strand, 644 - 938
Target Start/End: Original strand, 55626313 - 55626606
Alignment:
Q  644 accattgcctggaggtagcgtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttctcacaaatttcacagttgtcatgactctgc 743  Q
    ||||| |||| ||||||| |||||| || |||||||||||||||||||||| |||||||| |||||||||||| |||||||   ||||||||||||||||    
T  55626313 accatggcctagaggtagtgtctcatctacatcttccaaccaatatgtctcgagaattttaacagccttctcataaatttctttgttgtcatgactctgc 55626412  T
Q  744 aagttttcaatcttttccaatccccccgcgtcctctatcatcagagcataccagttgacatctcccatgtaaccggggtttttctctgcttctccaacct 843  Q
    |||||||| || |||||||||||| | || || ||||||||| |||||||| |||||||||||||| ||| ||    | ||||||| |||||||||||||    
T  55626413 aagttttcgat-ttttccaatccctcagcatcatctatcatctgagcatacaagttgacatctcccgtgttacaaaagcttttctccgcttctccaacct 55626511  T
Q  844 tcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggctc 938  Q
    | ||||||||||||||||  | ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  55626512 ttagaaaattctcaagaccatctaaacagacagaaacaatttttggatcagggcaaacaagcaaatcacacagaggcttaatgcaaccatggctc 55626606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 676 - 935
Target Start/End: Original strand, 55663621 - 55663880
Alignment:
Q  676 cttccaaccaatatgtctcaagaattttgacagccttctcacaaatttcacagttgtcatgactctgcaagttttcaatcttttccaatccccccgcgtc 775  Q
    ||||||||||||||||||| |  ||| | |||||||||||| ||||||||  || ||  ||||||||||||||||||||||||||||||||| |  | ||    
T  55663621 cttccaaccaatatgtctcgacgattctaacagccttctcataaatttcaatgtggttgtgactctgcaagttttcaatcttttccaatccctcaacatc 55663720  T
Q  776 ctctatcatcagagcataccagttgacatctcccatgtaaccggggtttttctctgcttctccaaccttcagaaaattctcaagacattgtaaacagaca 875  Q
     ||||||||| |||||||| |||||||||||||  ||| ||    ||||||||| ||||||||||||| ||||||||||||||||| || ||| ||||||    
T  55663721 atctatcatctgagcatacaagttgacatctccggtgttacaaaagtttttctccgcttctccaacctccagaaaattctcaagaccttctaagcagaca 55663820  T
Q  876 gtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctgg 935  Q
    | ||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  55663821 gcaacaattgttggatcagggcaaacaagcaaatcacacagaggtttaatgcaaccctgg 55663880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 110; E-Value: 7e-55
Query Start/End: Original strand, 653 - 938
Target Start/End: Complemental strand, 55637421 - 55637136
Alignment:
Q  653 tggaggtagcgtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttctcacaaatttcacagttgtcatgactctgcaagttttca 752  Q
    ||||||||  |||||  |||||||||  ||||||||||| ||||||||||| ||||||||||||| |||||||  |||||||||||||||||||||||||    
T  55637421 tggaggtactgtctcgtcttcatctttaaaccaatatgtttcaagaattttaacagccttctcacgaatttcattgttgtcatgactctgcaagttttca 55637322  T
Q  753 atcttttccaatccccccgcgtcctctatcatcagagcataccagttgacatctcccatgtaaccggggtttttctctgcttctccaaccttcagaaaat 852  Q
    |||| | || | ||  | |||||   ||||||| || ||||| |||||||||||||| |||  ||   | |||| || ||||||||||||||||||||||    
T  55637321 atctctacccaaccgtcagcgtcaggtatcatctgaacatacaagttgacatctcccgtgtttccatagcttttatcggcttctccaaccttcagaaaat 55637222  T
Q  853 tctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggctc 938  Q
    ||||||||| || || ||| |||||||||||| ||||||||  |  | ||||||||||||||||||||||||||||||| ||||||    
T  55637221 tctcaagaccttctagacaaacagtaacaattcttggatcatggatagcaagcaaatcacacagaggcttaatgcaaccttggctc 55637136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 3670363 - 3670481
Alignment:
Q  8 catgattcaaagctaccaacttctgaaaatcaagaacattttcagctggacatg---atgaattctaaaagctttttggacagatcaattggttcaaata 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||| ||||||||||||||||||||||||||||||||    
T  3670363 catgattcaaagctaccaacttctgaaaatcaagaacattttcagctggacatgttgatgaattctagaagctttttggacagatcaattggttcaaata 3670462  T
Q  105 ccaattctgaacaatacgc 123  Q
    |||||||||||||||||||    
T  3670463 ccaattctgaacaatacgc 3670481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 756 - 938
Target Start/End: Complemental strand, 54630314 - 54630132
Alignment:
Q  756 ttttccaatccccccgcgtcctctatcatcagagcataccagttgacatctcccatgtaaccggggtttttctctgcttctccaaccttcagaaaattct 855  Q
    |||||||||||| |  | |||| |||| || |||||||| |||||||||||||  ||| ||    | |||||||||||||||||||||| ||||||||||    
T  54630314 ttttccaatccctcaacatcctttatcgtctgagcatacaagttgacatctccggtgttacttatgcttttctctgcttctccaacctttagaaaattct 54630215  T
Q  856 caagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggctc 938  Q
    |||||| || || ||| |||||||| ||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  54630214 caagaccttctagacaaacagtaactattcttggatcagggcaaactagcaaatcacacagaggcttaatgcaaccctggctc 54630132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 663 - 856
Target Start/End: Complemental strand, 54630515 - 54630322
Alignment:
Q  663 gtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttctcacaaatttcacagttgtcatgactctgcaagttttcaatcttttcca 762  Q
    |||||| |||||||||||||||||||| |||| ||||||||  ||||||||||| ||||||| | ||  |||||||| | ||||||||||||||||||||    
T  54630515 gtctcatcttcatcttccaaccaatatctctcgagaattttagcagccttctcataaatttctctgtcttcatgactatccaagttttcaatcttttcca 54630416  T
Q  763 atccccccgcgtcctctatcatcagagcataccagttgacatctcccatgtaaccggggtttttctctgcttctccaaccttcagaaaattctc 856  Q
    |||||    | |||||||||||| |||||||| | |||||||||||| ||| |||     |||||||||||||||||||||||||||| |||||    
T  54630415 atcccttaacatcctctatcatctgagcatacaaattgacatctcccgtgttaccaaatcttttctctgcttctccaaccttcagaaatttctc 54630322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 943 - 1056
Target Start/End: Complemental strand, 55637032 - 55636917
Alignment:
Q  943 atactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactc-gcattttgaagaaga-tgacc 1040  Q
    ||||| |||||||||||||||||  ||||||||| ||||| ||||||||||||| ||||| |||  | |||||||||| ||||||||||||||| ||||     
T  55637032 atacttgatttgctcatgggtaccaccagatgtaacattaaagagtgcccatgcagcttcttttgcaatgtcaaactcggcattttgaagaagattgact 55636933  T
Q  1041 agaagggcaatcagac 1056  Q
    ||  ||||||||||||    
T  55636932 aggggggcaatcagac 55636917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 944 - 1036
Target Start/End: Original strand, 54861185 - 54861278
Alignment:
Q  944 tactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactc-gcattttgaagaagat 1036  Q
    |||| ||||||||| |||||||  || ||||||||||||| |||||||||||| ||||| |||  | |||||||||| ||||||||||||||||    
T  54861185 tacttgatttgctcgtgggtaccacctgatgtagcattagtgagtgcccatgcagcttcttttttaatgtcaaactcagcattttgaagaagat 54861278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 656 - 767
Target Start/End: Original strand, 50189997 - 50190108
Alignment:
Q  656 aggtagcgtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttctcacaaatttcacagttgtcatgactctgcaagttttcaatc 755  Q
    ||||||| ||||| ||||||| | | |||||||||| ||||||||||| |||||||||||| | |||||   ||| |||||||| |||| |||||| |||    
T  50189997 aggtagcatctcatcttcatcgttcgaccaatatgtttcaagaattttaacagccttctcatatatttcttggttatcatgactttgcaggttttctatc 50190096  T
Q  756 ttttccaatccc 767  Q
    || || ||||||    
T  50190097 ttgtcaaatccc 50190108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 943 - 1002
Target Start/End: Original strand, 55663993 - 55664052
Alignment:
Q  943 atactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttc 1002  Q
    ||||| ||||||||||||||||| |||||||||||||||| | | ||||||||| |||||    
T  55663993 atacttgatttgctcatgggtaccgccagatgtagcattaaataatgcccatgcagcttc 55664052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 943 - 1036
Target Start/End: Original strand, 52983286 - 52983380
Alignment:
Q  943 atactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactc-gcattttgaagaagat 1036  Q
    ||||| |||||||||| ||||||  | | | ||||||||||||||||||||||| ||||| |||  | |||||||||| |||| |||||||||||    
T  52983286 atacttgatttgctcaggggtaccactaaacgtagcattagagagtgcccatgcagcttcttttttaatgtcaaactcggcatattgaagaagat 52983380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 365 - 396
Target Start/End: Complemental strand, 49211880 - 49211849
Alignment:
Q  365 aactattagaatataaaatattcattgtataa 396  Q
    ||||||||||||||||||||||||||||||||    
T  49211880 aactattagaatataaaatattcattgtataa 49211849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 368 - 402
Target Start/End: Original strand, 55157627 - 55157661
Alignment:
Q  368 tattagaatataaaatattcattgtataatttgtt 402  Q
    ||||||||||||||||||||||||||||| |||||    
T  55157627 tattagaatataaaatattcattgtataaattgtt 55157661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 368 - 397
Target Start/End: Complemental strand, 3673456 - 3673427
Alignment:
Q  368 tattagaatataaaatattcattgtataat 397  Q
    ||||||||||||||||||||||||||||||    
T  3673456 tattagaatataaaatattcattgtataat 3673427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 270; Significance: 1e-150; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 615 - 940
Target Start/End: Complemental strand, 9891757 - 9891432
Alignment:
Q  615 ctgcttctaaagttaaaaccaggttgagaaccattgcctggaggtagcgtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttct 714  Q
    |||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  9891757 ctgcctctaaagttaaaaccaggttgagaaccattgcctggagatggcgtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttcc 9891658  T
Q  715 cacaaatttcacagttgtcatgactctgcaagttttcaatcttttccaatccccccgcgtcctctatcatcagagcataccagttgacatctcccatgta 814  Q
    || |||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||  ||||    
T  9891657 cataaatttcatagttgtcatgactctgcaagttttcaatcttttccaatccctcagcgtcctctatcatcagagcatacaagttgacatctcctgtgta 9891558  T
Q  815 accggggtttttctctgcttctccaaccttcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacac 914  Q
    ||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9891557 accggggtttttccccgcttctccaaccttcagaaaatcctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacac 9891458  T
Q  915 agaggcttaatgcaaccctggctcgc 940  Q
    ||||||||||||||||||||||||||    
T  9891457 agaggcttaatgcaaccctggctcgc 9891432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 944 - 1056
Target Start/End: Complemental strand, 9891318 - 9891204
Alignment:
Q  944 tactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaact-cgcattttgaagaaga-tgacca 1041  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  9891318 tactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacca 9891219  T
Q  1042 gaagggcaatcagac 1056  Q
    || ||||||||||||    
T  9891218 gaggggcaatcagac 9891204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 480 - 619
Target Start/End: Complemental strand, 9891921 - 9891792
Alignment:
Q  480 agacaggcacgagaatgcccatcttacacactagttaccaataaaaactacgactcaataaaggatagaatccaagctggcatcaaagaaaccactcgtc 579  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||    
T  9891921 agacaggcacgagaatggccatcttacacactagttaccaataaaaactacaacttaataaaggatagaatccaagct-gcatcaaagaaaccactcgtc 9891823  T
Q  580 atggttccttggttccttgcaacaatggtcacattctgct 619  Q
    |          |||||||||||||||||||||||||||||    
T  9891822 a---------cgttccttgcaacaatggtcacattctgct 9891792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 727 - 849
Target Start/End: Complemental strand, 17220280 - 17220158
Alignment:
Q  727 agttgtcatgactctgcaagttttcaatcttttccaatccccccgcgtcctctatcatcagagcataccagttgacatctcccatgtaaccggggttttt 826  Q
    ||||||||||| |||||| ||| |||||||||||||||||| | || || ||||||||  |||||||| |||||||||||||| ||| |||   | ||||    
T  17220280 agttgtcatgattctgcatgttatcaatcttttccaatccctcagcatcttctatcatttgagcatacaagttgacatctcccgtgttaccaaagctttt 17220181  T
Q  827 ctctgcttctccaaccttcagaa 849  Q
    ||| |||||||||||||||||||    
T  17220180 ctccgcttctccaaccttcagaa 17220158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 395 - 453
Target Start/End: Original strand, 9891982 - 9892040
Alignment:
Q  395 aatttgtttattttctaattaactttcgtgtaataatagttttcatttaaataacaaaa 453  Q
    ||||| ||||||| |||||||||||| |||||||| |||||||||||||||||||||||    
T  9891982 aatttatttatttcctaattaacttttgtgtaatattagttttcatttaaataacaaaa 9892040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 172; Significance: 7e-92; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 7e-92
Query Start/End: Original strand, 627 - 938
Target Start/End: Complemental strand, 13403854 - 13403543
Alignment:
Q  627 ttaaaaccaggttgagaaccattgcctggaggtagcgtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttctcacaaatttcac 726  Q
    |||||||||||||||||||||| |||||| ||||| |||||  ||||||||||||||||||||||||| |||||||| |||||||||||  ||||||||     
T  13403854 ttaaaaccaggttgagaaccatcgcctggtggtagtgtctcgtcttcatcttccaaccaatatgtctcgagaattttaacagccttctcgtaaatttcat 13403755  T
Q  727 agttgtcatgactctgcaagttttcaatcttttccaatccccccgcgtcctctatcatcagagcataccagttgacatctcccatgtaaccggggttttt 826  Q
     ||||||||||||||||| ||| |||||||||||||||||| |||| || ||||||||| |||||||| ||||||||||||||  || |||   | ||||    
T  13403754 tgttgtcatgactctgcaggttctcaatcttttccaatccctccgcctcatctatcatctgagcatacaagttgacatctcccgcgttaccaaagctttt 13403655  T
Q  827 ctctgcttctccaaccttcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatg 926  Q
    |||||||||||||| |||||||| ||||||||||| || ||||||||| ||||||||| ||||||| | ||||||||| | |||||||||||||||||||    
T  13403654 ctctgcttctccaatcttcagaatattctcaagaccttctaaacagacggtaacaattcttggatcggggcaaacaagaagatcacacagaggcttaatg 13403555  T
Q  927 caaccctggctc 938  Q
    ||||||||||||    
T  13403554 caaccctggctc 13403543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 943 - 1054
Target Start/End: Complemental strand, 13403439 - 13403326
Alignment:
Q  943 atactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactc-gcattttgaagaaga-tgacc 1040  Q
    ||||| ||||||||||||||||| ||||||||||||||| |||||||||||||| ||||| |||  | ||||||| || ||||||||||||||| |||||    
T  13403439 atacttgatttgctcatgggtaccgccagatgtagcattggagagtgcccatgcagcttcttttttaatgtcaaattcggcattttgaagaagattgacc 13403340  T
Q  1041 agaagggcaatcag 1054  Q
    ||| | ||||||||    
T  13403339 agaggagcaatcag 13403326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 638 - 763
Target Start/End: Original strand, 37308569 - 37308694
Alignment:
Q  638 ttgagaaccattgcctggaggtagcgtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttctcacaaatttcacagttgtcatga 737  Q
    ||||||| ||| ||||||||| |  |||||| |||| || |||||||| |||||||||||||| || |||||||| ||| |||| ||   ||||||||||    
T  37308569 ttgagaagcatcgcctggaggcatggtctcatcttcttcctccaaccagtatgtctcaagaatcttcacagccttttcataaatctctgtgttgtcatga 37308668  T
Q  738 ctctgcaagttttcaatcttttccaa 763  Q
    ||||| | ||| ||||| || |||||    
T  37308669 ctctggaggttctcaattttctccaa 37308694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 365 - 396
Target Start/End: Original strand, 4125478 - 4125509
Alignment:
Q  365 aactattagaatataaaatattcattgtataa 396  Q
    ||||||||||||||||||||||||||||||||    
T  4125478 aactattagaatataaaatattcattgtataa 4125509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 365 - 396
Target Start/End: Complemental strand, 24507897 - 24507866
Alignment:
Q  365 aactattagaatataaaatattcattgtataa 396  Q
    ||||||||||||||||||||||||||||||||    
T  24507897 aactattagaatataaaatattcattgtataa 24507866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 678 - 763
Target Start/End: Original strand, 46153223 - 46153308
Alignment:
Q  678 tccaaccaatatgtctcaagaattttgacagccttctcacaaatttcacagttgtcatgactctgcaagttttcaatcttttccaa 763  Q
    |||||||| |||||||| ||||| || |||||||| ||| |||| |||  ||||||||||||||| | ||| ||||| || |||||    
T  46153223 tccaaccagtatgtctcgagaatcttcacagccttttcataaatctcattgttgtcatgactctggaggttctcaattttctccaa 46153308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 365 - 396
Target Start/End: Original strand, 7725536 - 7725567
Alignment:
Q  365 aactattagaatataaaatattcattgtataa 396  Q
    ||||||||||||||||||||||||||||||||    
T  7725536 aactattagaatataaaatattcattgtataa 7725567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0276 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 366 - 396
Target Start/End: Complemental strand, 2139 - 2109
Alignment:
Q  366 actattagaatataaaatattcattgtataa 396  Q
    |||||||||||||||||||||||||||||||    
T  2139 actattagaatataaaatattcattgtataa 2109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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